Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0673

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0671 and Rru_A0672 are separated by 84 nucleotidesRru_A0672 and Rru_AR0017 are separated by 217 nucleotidesRru_AR0017 and Rru_A0673 are separated by 44 nucleotidesRru_A0673 and Rru_A0674 are separated by 57 nucleotides Rru_A0671: Rru_A0671 - cobalamin synthesis CobW protein (NCBI), at 793,740 to 794,792 _A0671 Rru_A0672: Rru_A0672 - hypothetical protein (NCBI), at 794,877 to 795,188 _A0672 Rru_AR0017: Rru_AR0017 - tRNA-Ser (NCBI), at 795,406 to 795,496 _AR0017 Rru_A0673: Rru_A0673 - hypothetical protein (NCBI), at 795,541 to 795,846 _A0673 Rru_A0674: Rru_A0674 - Phage integrase (NCBI), at 795,904 to 797,064 _A0674 Position (kb) 795 796Strain fitness (log2 ratio) -1 0 1 2 3at 794.682 kb on + strand, within Rru_A0671at 794.682 kb on + strand, within Rru_A0671at 794.685 kb on + strand, within Rru_A0671at 794.685 kb on + strand, within Rru_A0671at 794.685 kb on + strand, within Rru_A0671at 794.686 kb on - strand, within Rru_A0671at 794.686 kb on - strand, within Rru_A0671at 794.686 kb on - strand, within Rru_A0671at 794.791 kb on - strandat 794.862 kb on - strandat 795.021 kb on - strand, within Rru_A0672at 795.094 kb on + strand, within Rru_A0672at 795.095 kb on - strand, within Rru_A0672at 795.169 kb on - strandat 795.169 kb on - strandat 795.174 kb on - strandat 795.184 kb on - strandat 795.256 kb on + strandat 795.256 kb on + strandat 795.257 kb on - strandat 795.519 kb on + strandat 795.522 kb on + strandat 795.598 kb on + strand, within Rru_A0673at 795.599 kb on - strand, within Rru_A0673at 795.599 kb on - strand, within Rru_A0673at 795.599 kb on - strand, within Rru_A0673at 795.629 kb on - strand, within Rru_A0673at 795.629 kb on - strand, within Rru_A0673at 795.793 kb on - strand, within Rru_A0673at 795.837 kb on + strandat 795.837 kb on + strandat 795.838 kb on - strandat 795.840 kb on + strandat 795.840 kb on + strandat 795.841 kb on - strandat 795.841 kb on - strandat 795.928 kb on - strandat 796.104 kb on + strand, within Rru_A0674at 796.104 kb on + strand, within Rru_A0674at 796.104 kb on + strand, within Rru_A0674at 796.104 kb on + strand, within Rru_A0674at 796.105 kb on - strand, within Rru_A0674at 796.105 kb on - strand, within Rru_A0674at 796.134 kb on - strand, within Rru_A0674at 796.345 kb on + strand, within Rru_A0674at 796.345 kb on + strand, within Rru_A0674at 796.345 kb on + strand, within Rru_A0674at 796.345 kb on + strand, within Rru_A0674at 796.345 kb on + strand, within Rru_A0674at 796.345 kb on + strand, within Rru_A0674at 796.346 kb on - strand, within Rru_A0674at 796.346 kb on - strand, within Rru_A0674at 796.346 kb on - strand, within Rru_A0674at 796.346 kb on - strand, within Rru_A0674at 796.349 kb on - strand, within Rru_A0674at 796.366 kb on + strand, within Rru_A0674at 796.366 kb on + strand, within Rru_A0674at 796.367 kb on - strand, within Rru_A0674at 796.367 kb on - strand, within Rru_A0674at 796.422 kb on - strand, within Rru_A0674at 796.528 kb on - strand, within Rru_A0674at 796.528 kb on - strand, within Rru_A0674at 796.543 kb on + strand, within Rru_A0674at 796.544 kb on - strand, within Rru_A0674at 796.615 kb on + strand, within Rru_A0674at 796.616 kb on - strand, within Rru_A0674at 796.822 kb on + strand, within Rru_A0674at 796.823 kb on - strand, within Rru_A0674at 796.823 kb on - strand, within Rru_A0674at 796.823 kb on - strand, within Rru_A0674at 796.824 kb on + strand, within Rru_A0674at 796.824 kb on + strand, within Rru_A0674at 796.824 kb on + strand, within Rru_A0674at 796.825 kb on - strand, within Rru_A0674at 796.825 kb on - strand, within Rru_A0674at 796.825 kb on - strand, within Rru_A0674at 796.825 kb on - strand, within Rru_A0674at 796.825 kb on - strand, within Rru_A0674at 796.825 kb on - strand, within Rru_A0674

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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794,682 + Rru_A0671 0.89 -0.0
794,682 + Rru_A0671 0.89 +0.3
794,685 + Rru_A0671 0.90 -0.0
794,685 + Rru_A0671 0.90 +1.0
794,685 + Rru_A0671 0.90 -1.6
794,686 - Rru_A0671 0.90 -0.0
794,686 - Rru_A0671 0.90 -0.0
794,686 - Rru_A0671 0.90 +1.3
794,791 - +0.2
794,862 - +0.9
795,021 - Rru_A0672 0.46 -0.0
795,094 + Rru_A0672 0.70 +1.2
795,095 - Rru_A0672 0.70 +0.7
795,169 - +0.4
795,169 - -0.0
795,174 - -0.0
795,184 - -0.0
795,256 + +1.6
795,256 + -0.0
795,257 - +1.4
795,519 + -0.0
795,522 + +1.8
795,598 + Rru_A0673 0.19 +0.8
795,599 - Rru_A0673 0.19 +1.0
795,599 - Rru_A0673 0.19 -0.1
795,599 - Rru_A0673 0.19 +0.8
795,629 - Rru_A0673 0.29 +0.7
795,629 - Rru_A0673 0.29 +0.2
795,793 - Rru_A0673 0.82 -0.0
795,837 + +0.8
795,837 + +0.7
795,838 - -0.0
795,840 + +1.1
795,840 + +1.0
795,841 - -0.0
795,841 - -0.0
795,928 - +1.5
796,104 + Rru_A0674 0.17 -0.0
796,104 + Rru_A0674 0.17 -0.0
796,104 + Rru_A0674 0.17 +0.7
796,104 + Rru_A0674 0.17 +1.2
796,105 - Rru_A0674 0.17 +2.0
796,105 - Rru_A0674 0.17 +1.6
796,134 - Rru_A0674 0.20 -0.0
796,345 + Rru_A0674 0.38 -0.0
796,345 + Rru_A0674 0.38 +0.8
796,345 + Rru_A0674 0.38 +2.7
796,345 + Rru_A0674 0.38 +1.2
796,345 + Rru_A0674 0.38 -0.0
796,345 + Rru_A0674 0.38 +1.6
796,346 - Rru_A0674 0.38 +1.4
796,346 - Rru_A0674 0.38 +1.2
796,346 - Rru_A0674 0.38 +0.3
796,346 - Rru_A0674 0.38 +1.5
796,349 - Rru_A0674 0.38 +1.0
796,366 + Rru_A0674 0.40 -0.0
796,366 + Rru_A0674 0.40 +1.0
796,367 - Rru_A0674 0.40 +0.6
796,367 - Rru_A0674 0.40 +1.4
796,422 - Rru_A0674 0.45 +1.0
796,528 - Rru_A0674 0.54 +0.6
796,528 - Rru_A0674 0.54 +1.2
796,543 + Rru_A0674 0.55 -0.0
796,544 - Rru_A0674 0.55 -0.0
796,615 + Rru_A0674 0.61 +2.8
796,616 - Rru_A0674 0.61 +1.7
796,822 + Rru_A0674 0.79 +1.3
796,823 - Rru_A0674 0.79 -0.0
796,823 - Rru_A0674 0.79 +1.4
796,823 - Rru_A0674 0.79 +1.8
796,824 + Rru_A0674 0.79 +2.8
796,824 + Rru_A0674 0.79 -1.7
796,824 + Rru_A0674 0.79 -0.0
796,825 - Rru_A0674 0.79 +1.0
796,825 - Rru_A0674 0.79 +1.9
796,825 - Rru_A0674 0.79 +1.7
796,825 - Rru_A0674 0.79 -0.0
796,825 - Rru_A0674 0.79 -0.0
796,825 - Rru_A0674 0.79 -0.0

Or see this region's nucleotide sequence