Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0671 and Rru_A0672 are separated by 84 nucleotides Rru_A0672 and Rru_AR0017 are separated by 217 nucleotides Rru_AR0017 and Rru_A0673 are separated by 44 nucleotides Rru_A0673 and Rru_A0674 are separated by 57 nucleotides
Rru_A0671: Rru_A0671 - cobalamin synthesis CobW protein (NCBI), at 793,740 to 794,792
_A0671
Rru_A0672: Rru_A0672 - hypothetical protein (NCBI), at 794,877 to 795,188
_A0672
Rru_AR0017: Rru_AR0017 - tRNA-Ser (NCBI), at 795,406 to 795,496
_AR0017
Rru_A0673: Rru_A0673 - hypothetical protein (NCBI), at 795,541 to 795,846
_A0673
Rru_A0674: Rru_A0674 - Phage integrase (NCBI), at 795,904 to 797,064
_A0674
Position (kb) 794
795
796 Strain fitness (log2 ratio) -1
0
1
2 at 794.048 kb on + strand, within Rru_A0671 at 794.048 kb on + strand, within Rru_A0671 at 794.048 kb on + strand, within Rru_A0671 at 794.048 kb on + strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.484 kb on - strand, within Rru_A0671 at 794.682 kb on + strand, within Rru_A0671 at 794.682 kb on + strand, within Rru_A0671 at 794.685 kb on + strand, within Rru_A0671 at 794.685 kb on + strand, within Rru_A0671 at 794.685 kb on + strand, within Rru_A0671 at 794.686 kb on - strand, within Rru_A0671 at 794.686 kb on - strand, within Rru_A0671 at 794.686 kb on - strand, within Rru_A0671 at 794.791 kb on - strand at 794.862 kb on - strand at 795.021 kb on - strand, within Rru_A0672 at 795.094 kb on + strand, within Rru_A0672 at 795.095 kb on - strand, within Rru_A0672 at 795.169 kb on - strand at 795.169 kb on - strand at 795.174 kb on - strand at 795.184 kb on - strand at 795.256 kb on + strand at 795.256 kb on + strand at 795.257 kb on - strand at 795.519 kb on + strand at 795.522 kb on + strand at 795.598 kb on + strand, within Rru_A0673 at 795.599 kb on - strand, within Rru_A0673 at 795.599 kb on - strand, within Rru_A0673 at 795.599 kb on - strand, within Rru_A0673 at 795.629 kb on - strand, within Rru_A0673 at 795.629 kb on - strand, within Rru_A0673 at 795.793 kb on - strand, within Rru_A0673 at 795.837 kb on + strand at 795.837 kb on + strand at 795.838 kb on - strand at 795.840 kb on + strand at 795.840 kb on + strand at 795.841 kb on - strand at 795.841 kb on - strand at 795.928 kb on - strand at 796.104 kb on + strand, within Rru_A0674 at 796.104 kb on + strand, within Rru_A0674 at 796.104 kb on + strand, within Rru_A0674 at 796.104 kb on + strand, within Rru_A0674 at 796.105 kb on - strand, within Rru_A0674 at 796.105 kb on - strand, within Rru_A0674 at 796.134 kb on - strand, within Rru_A0674
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 794,048 + Rru_A0671 0.29 +2.3 794,048 + Rru_A0671 0.29 -0.6 794,048 + Rru_A0671 0.29 -1.0 794,048 + Rru_A0671 0.29 -0.0 794,049 - Rru_A0671 0.29 +0.6 794,049 - Rru_A0671 0.29 -0.6 794,049 - Rru_A0671 0.29 -0.0 794,049 - Rru_A0671 0.29 -0.0 794,049 - Rru_A0671 0.29 -0.0 794,484 - Rru_A0671 0.71 +1.3 794,682 + Rru_A0671 0.89 -0.0 794,682 + Rru_A0671 0.89 +0.3 794,685 + Rru_A0671 0.90 -0.0 794,685 + Rru_A0671 0.90 +1.0 794,685 + Rru_A0671 0.90 -1.6 794,686 - Rru_A0671 0.90 -0.0 794,686 - Rru_A0671 0.90 -0.0 794,686 - Rru_A0671 0.90 +1.3 794,791 - +0.2 794,862 - +0.9 795,021 - Rru_A0672 0.46 -0.0 795,094 + Rru_A0672 0.70 +1.2 795,095 - Rru_A0672 0.70 +0.7 795,169 - +0.4 795,169 - -0.0 795,174 - -0.0 795,184 - -0.0 795,256 + +1.6 795,256 + -0.0 795,257 - +1.4 795,519 + -0.0 795,522 + +1.8 795,598 + Rru_A0673 0.19 +0.8 795,599 - Rru_A0673 0.19 +1.0 795,599 - Rru_A0673 0.19 -0.1 795,599 - Rru_A0673 0.19 +0.8 795,629 - Rru_A0673 0.29 +0.7 795,629 - Rru_A0673 0.29 +0.2 795,793 - Rru_A0673 0.82 -0.0 795,837 + +0.8 795,837 + +0.7 795,838 - -0.0 795,840 + +1.1 795,840 + +1.0 795,841 - -0.0 795,841 - -0.0 795,928 - +1.5 796,104 + Rru_A0674 0.17 -0.0 796,104 + Rru_A0674 0.17 -0.0 796,104 + Rru_A0674 0.17 +0.7 796,104 + Rru_A0674 0.17 +1.2 796,105 - Rru_A0674 0.17 +2.0 796,105 - Rru_A0674 0.17 +1.6 796,134 - Rru_A0674 0.20 -0.0
Or see this region's nucleotide sequence