Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0668 and Rru_A0669 overlap by 4 nucleotides Rru_A0669 and Rru_A0670 are separated by 170 nucleotides Rru_A0670 and Rru_A0671 are separated by 3 nucleotides
Rru_A0668: Rru_A0668 - Cobalamin-5-phosphate synthase CobS (NCBI), at 791,573 to 792,358
_A0668
Rru_A0669: Rru_A0669 - Phosphoglycerate/bisphosphoglycerate mutase (NCBI), at 792,355 to 792,993
_A0669
Rru_A0670: Rru_A0670 - Cobalbumin biosynthesis enzyme (NCBI), at 793,164 to 793,736
_A0670
Rru_A0671: Rru_A0671 - cobalamin synthesis CobW protein (NCBI), at 793,740 to 794,792
_A0671
Position (kb) 793
794 Strain fitness (log2 ratio) -2
-1
0
1
2 at 792.233 kb on + strand, within Rru_A0668 at 792.233 kb on + strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.986 kb on + strand at 792.986 kb on + strand at 792.986 kb on + strand at 792.986 kb on + strand at 792.986 kb on + strand at 792.987 kb on - strand at 792.987 kb on - strand at 792.987 kb on - strand at 792.991 kb on + strand at 792.991 kb on + strand at 792.991 kb on + strand at 792.991 kb on + strand at 793.296 kb on + strand, within Rru_A0670 at 793.296 kb on + strand, within Rru_A0670 at 793.297 kb on - strand, within Rru_A0670 at 793.481 kb on + strand, within Rru_A0670 at 793.685 kb on - strand at 794.048 kb on + strand, within Rru_A0671 at 794.048 kb on + strand, within Rru_A0671 at 794.048 kb on + strand, within Rru_A0671 at 794.048 kb on + strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.484 kb on - strand, within Rru_A0671 at 794.682 kb on + strand, within Rru_A0671 at 794.682 kb on + strand, within Rru_A0671 at 794.685 kb on + strand, within Rru_A0671 at 794.685 kb on + strand, within Rru_A0671 at 794.685 kb on + strand, within Rru_A0671 at 794.686 kb on - strand, within Rru_A0671 at 794.686 kb on - strand, within Rru_A0671 at 794.686 kb on - strand, within Rru_A0671
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 792,233 + Rru_A0668 0.84 -0.6 792,233 + Rru_A0668 0.84 -1.2 792,234 - Rru_A0668 0.84 -0.0 792,234 - Rru_A0668 0.84 -0.0 792,234 - Rru_A0668 0.84 -0.0 792,986 + +0.3 792,986 + -2.0 792,986 + -0.0 792,986 + -0.0 792,986 + -0.0 792,987 - +0.7 792,987 - +0.2 792,987 - -0.3 792,991 + -0.0 792,991 + +0.5 792,991 + -0.0 792,991 + +0.4 793,296 + Rru_A0670 0.23 -0.0 793,296 + Rru_A0670 0.23 -0.7 793,297 - Rru_A0670 0.23 -2.3 793,481 + Rru_A0670 0.55 -0.0 793,685 - -0.0 794,048 + Rru_A0671 0.29 +2.3 794,048 + Rru_A0671 0.29 -0.6 794,048 + Rru_A0671 0.29 -1.0 794,048 + Rru_A0671 0.29 -0.0 794,049 - Rru_A0671 0.29 +0.6 794,049 - Rru_A0671 0.29 -0.6 794,049 - Rru_A0671 0.29 -0.0 794,049 - Rru_A0671 0.29 -0.0 794,049 - Rru_A0671 0.29 -0.0 794,484 - Rru_A0671 0.71 +1.3 794,682 + Rru_A0671 0.89 -0.0 794,682 + Rru_A0671 0.89 +0.3 794,685 + Rru_A0671 0.90 -0.0 794,685 + Rru_A0671 0.90 +1.0 794,685 + Rru_A0671 0.90 -1.6 794,686 - Rru_A0671 0.90 -0.0 794,686 - Rru_A0671 0.90 -0.0 794,686 - Rru_A0671 0.90 +1.3
Or see this region's nucleotide sequence