Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0665

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0664 and Rru_A0665 are separated by 0 nucleotidesRru_A0665 and Rru_A0666 overlap by 4 nucleotides Rru_A0664: Rru_A0664 - Signal Transduction Histidine Kinase (NCBI), at 787,203 to 788,237 _A0664 Rru_A0665: Rru_A0665 - Response regulator receiver domain protein (CheY) (NCBI), at 788,238 to 788,684 _A0665 Rru_A0666: Rru_A0666 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 788,681 to 790,420 _A0666 Position (kb) 788 789Strain fitness (log2 ratio) -1 0 1 2 3at 787.252 kb on + strandat 787.435 kb on + strand, within Rru_A0664at 787.435 kb on + strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.439 kb on + strand, within Rru_A0664at 787.439 kb on + strand, within Rru_A0664at 787.440 kb on - strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.757 kb on + strand, within Rru_A0664at 787.757 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.931 kb on - strand, within Rru_A0664at 787.931 kb on - strand, within Rru_A0664at 787.931 kb on - strand, within Rru_A0664at 787.931 kb on - strand, within Rru_A0664at 787.993 kb on + strand, within Rru_A0664at 787.993 kb on + strand, within Rru_A0664at 787.993 kb on + strand, within Rru_A0664at 787.993 kb on + strand, within Rru_A0664at 787.994 kb on - strand, within Rru_A0664at 787.994 kb on - strand, within Rru_A0664at 787.994 kb on - strand, within Rru_A0664at 787.994 kb on - strand, within Rru_A0664at 787.994 kb on - strand, within Rru_A0664at 788.207 kb on + strandat 788.209 kb on + strandat 788.209 kb on + strandat 788.209 kb on + strandat 788.210 kb on - strandat 788.210 kb on - strandat 788.239 kb on + strandat 788.240 kb on - strandat 788.327 kb on + strand, within Rru_A0665at 788.330 kb on + strand, within Rru_A0665at 788.332 kb on + strand, within Rru_A0665at 788.333 kb on - strand, within Rru_A0665at 788.703 kb on + strandat 788.711 kb on + strandat 788.712 kb on - strandat 788.712 kb on - strandat 788.723 kb on + strandat 788.723 kb on + strandat 788.723 kb on + strandat 788.724 kb on - strandat 788.724 kb on - strandat 788.729 kb on + strandat 788.729 kb on + strandat 788.729 kb on + strandat 788.729 kb on + strandat 788.729 kb on + strandat 788.729 kb on + strandat 788.729 kb on + strandat 788.730 kb on - strandat 788.731 kb on + strandat 788.731 kb on + strandat 788.731 kb on + strandat 788.732 kb on - strandat 788.732 kb on - strandat 788.732 kb on - strandat 788.732 kb on - strandat 788.732 kb on - strandat 788.988 kb on + strand, within Rru_A0666at 788.988 kb on + strand, within Rru_A0666at 788.989 kb on - strand, within Rru_A0666at 789.424 kb on + strand, within Rru_A0666at 789.424 kb on + strand, within Rru_A0666at 789.425 kb on - strand, within Rru_A0666at 789.426 kb on + strand, within Rru_A0666at 789.426 kb on + strand, within Rru_A0666at 789.426 kb on + strand, within Rru_A0666at 789.427 kb on - strand, within Rru_A0666at 789.627 kb on + strand, within Rru_A0666

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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787,252 + +1.6
787,435 + Rru_A0664 0.22 -0.0
787,435 + Rru_A0664 0.22 +0.3
787,436 - Rru_A0664 0.23 +2.1
787,436 - Rru_A0664 0.23 -0.0
787,436 - Rru_A0664 0.23 -0.0
787,436 - Rru_A0664 0.23 -1.0
787,436 - Rru_A0664 0.23 +0.7
787,439 + Rru_A0664 0.23 +1.3
787,439 + Rru_A0664 0.23 +0.8
787,440 - Rru_A0664 0.23 +1.4
787,630 + Rru_A0664 0.41 +1.7
787,630 + Rru_A0664 0.41 -0.0
787,630 + Rru_A0664 0.41 +1.3
787,630 + Rru_A0664 0.41 -1.0
787,630 + Rru_A0664 0.41 -0.0
787,631 - Rru_A0664 0.41 +0.8
787,631 - Rru_A0664 0.41 +3.1
787,631 - Rru_A0664 0.41 -0.0
787,631 - Rru_A0664 0.41 +0.9
787,631 - Rru_A0664 0.41 +0.8
787,757 + Rru_A0664 0.54 -0.0
787,757 + Rru_A0664 0.54 +1.2
787,930 + Rru_A0664 0.70 -0.7
787,930 + Rru_A0664 0.70 +1.3
787,930 + Rru_A0664 0.70 -0.0
787,930 + Rru_A0664 0.70 +1.1
787,930 + Rru_A0664 0.70 +2.4
787,931 - Rru_A0664 0.70 -0.0
787,931 - Rru_A0664 0.70 +0.5
787,931 - Rru_A0664 0.70 +1.4
787,931 - Rru_A0664 0.70 +0.6
787,993 + Rru_A0664 0.76 -0.0
787,993 + Rru_A0664 0.76 -1.6
787,993 + Rru_A0664 0.76 +1.8
787,993 + Rru_A0664 0.76 +0.9
787,994 - Rru_A0664 0.76 +1.0
787,994 - Rru_A0664 0.76 +1.0
787,994 - Rru_A0664 0.76 +1.5
787,994 - Rru_A0664 0.76 +1.3
787,994 - Rru_A0664 0.76 +1.1
788,207 + +2.6
788,209 + +2.7
788,209 + -0.0
788,209 + -0.0
788,210 - +1.1
788,210 - -0.7
788,239 + +0.9
788,240 - +1.6
788,327 + Rru_A0665 0.20 +0.7
788,330 + Rru_A0665 0.21 -0.0
788,332 + Rru_A0665 0.21 -0.0
788,333 - Rru_A0665 0.21 -0.0
788,703 + +0.9
788,711 + -0.0
788,712 - -0.0
788,712 - -0.0
788,723 + -0.0
788,723 + +1.4
788,723 + +2.7
788,724 - -0.7
788,724 - -1.6
788,729 + -0.0
788,729 + -0.0
788,729 + +1.0
788,729 + -0.0
788,729 + -1.0
788,729 + -0.0
788,729 + +1.1
788,730 - -0.0
788,731 + +1.2
788,731 + -0.0
788,731 + +1.8
788,732 - +1.0
788,732 - +1.2
788,732 - +2.0
788,732 - +1.0
788,732 - +1.1
788,988 + Rru_A0666 0.18 +1.0
788,988 + Rru_A0666 0.18 +1.4
788,989 - Rru_A0666 0.18 -1.6
789,424 + Rru_A0666 0.43 -0.0
789,424 + Rru_A0666 0.43 +1.7
789,425 - Rru_A0666 0.43 +1.1
789,426 + Rru_A0666 0.43 +3.1
789,426 + Rru_A0666 0.43 +1.2
789,426 + Rru_A0666 0.43 +0.5
789,427 - Rru_A0666 0.43 +0.8
789,627 + Rru_A0666 0.54 -0.0

Or see this region's nucleotide sequence