Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0663

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0661 and Rru_A0662 are separated by 14 nucleotidesRru_A0662 and Rru_A0663 are separated by 405 nucleotidesRru_A0663 and Rru_A0664 are separated by 232 nucleotides Rru_A0661: Rru_A0661 - Hly-III related proteins (NCBI), at 785,418 to 786,056 _A0661 Rru_A0662: Rru_A0662 - Translation initiation factor IF-1 (NCBI), at 786,071 to 786,358 _A0662 Rru_A0663: Rru_A0663 - Cold-shock DNA-binding domain protein (NCBI), at 786,764 to 786,970 _A0663 Rru_A0664: Rru_A0664 - Signal Transduction Histidine Kinase (NCBI), at 787,203 to 788,237 _A0664 Position (kb) 786 787Strain fitness (log2 ratio) -1 0 1 2 3at 785.776 kb on + strand, within Rru_A0661at 785.776 kb on + strand, within Rru_A0661at 785.829 kb on - strand, within Rru_A0661at 785.858 kb on + strand, within Rru_A0661at 785.859 kb on - strand, within Rru_A0661at 785.861 kb on - strand, within Rru_A0661at 786.030 kb on - strandat 786.436 kb on - strandat 786.582 kb on + strandat 786.582 kb on + strandat 786.583 kb on - strandat 786.583 kb on - strandat 786.766 kb on - strandat 786.782 kb on - strandat 786.880 kb on + strand, within Rru_A0663at 786.965 kb on - strandat 786.971 kb on + strandat 786.999 kb on + strandat 786.999 kb on + strandat 787.097 kb on + strandat 787.115 kb on + strandat 787.116 kb on - strandat 787.116 kb on - strandat 787.116 kb on - strandat 787.120 kb on - strandat 787.144 kb on + strandat 787.252 kb on + strandat 787.435 kb on + strand, within Rru_A0664at 787.435 kb on + strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.436 kb on - strand, within Rru_A0664at 787.439 kb on + strand, within Rru_A0664at 787.439 kb on + strand, within Rru_A0664at 787.440 kb on - strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.630 kb on + strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.631 kb on - strand, within Rru_A0664at 787.757 kb on + strand, within Rru_A0664at 787.757 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.930 kb on + strand, within Rru_A0664at 787.931 kb on - strand, within Rru_A0664at 787.931 kb on - strand, within Rru_A0664at 787.931 kb on - strand, within Rru_A0664at 787.931 kb on - strand, within Rru_A0664

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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785,776 + Rru_A0661 0.56 -1.2
785,776 + Rru_A0661 0.56 +1.7
785,829 - Rru_A0661 0.64 +0.6
785,858 + Rru_A0661 0.69 +1.8
785,859 - Rru_A0661 0.69 +2.1
785,861 - Rru_A0661 0.69 +1.4
786,030 - -1.0
786,436 - +0.3
786,582 + -0.0
786,582 + +0.7
786,583 - +2.5
786,583 - -0.0
786,766 - +1.3
786,782 - -0.0
786,880 + Rru_A0663 0.56 +1.9
786,965 - -0.1
786,971 + -0.0
786,999 + +3.5
786,999 + +2.2
787,097 + +1.3
787,115 + +1.3
787,116 - -1.5
787,116 - +1.7
787,116 - -0.0
787,120 - +0.7
787,144 + -0.5
787,252 + +1.6
787,435 + Rru_A0664 0.22 -0.0
787,435 + Rru_A0664 0.22 +0.3
787,436 - Rru_A0664 0.23 +2.1
787,436 - Rru_A0664 0.23 -0.0
787,436 - Rru_A0664 0.23 -0.0
787,436 - Rru_A0664 0.23 -1.0
787,436 - Rru_A0664 0.23 +0.7
787,439 + Rru_A0664 0.23 +1.3
787,439 + Rru_A0664 0.23 +0.8
787,440 - Rru_A0664 0.23 +1.4
787,630 + Rru_A0664 0.41 +1.7
787,630 + Rru_A0664 0.41 -0.0
787,630 + Rru_A0664 0.41 +1.3
787,630 + Rru_A0664 0.41 -1.0
787,630 + Rru_A0664 0.41 -0.0
787,631 - Rru_A0664 0.41 +0.8
787,631 - Rru_A0664 0.41 +3.1
787,631 - Rru_A0664 0.41 -0.0
787,631 - Rru_A0664 0.41 +0.9
787,631 - Rru_A0664 0.41 +0.8
787,757 + Rru_A0664 0.54 -0.0
787,757 + Rru_A0664 0.54 +1.2
787,930 + Rru_A0664 0.70 -0.7
787,930 + Rru_A0664 0.70 +1.3
787,930 + Rru_A0664 0.70 -0.0
787,930 + Rru_A0664 0.70 +1.1
787,930 + Rru_A0664 0.70 +2.4
787,931 - Rru_A0664 0.70 -0.0
787,931 - Rru_A0664 0.70 +0.5
787,931 - Rru_A0664 0.70 +1.4
787,931 - Rru_A0664 0.70 +0.6

Or see this region's nucleotide sequence