Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0626 and Rru_A0627 are separated by 83 nucleotides Rru_A0627 and Rru_A0628 overlap by 4 nucleotides
Rru_A0626: Rru_A0626 - Transcriptional Regulator, Fis family (NCBI), at 744,088 to 745,506
_A0626
Rru_A0627: Rru_A0627 - Bacteriochlorophyll/chlorophyll synthetase (NCBI), at 745,590 to 746,501
_A0627
Rru_A0628: Rru_A0628 - PUCC protein (NCBI), at 746,498 to 747,847
_A0628
Position (kb) 745
746
747 Strain fitness (log2 ratio) -2
-1
0
1
2 at 745.551 kb on - strand at 745.553 kb on - strand at 745.579 kb on - strand at 745.614 kb on + strand at 745.638 kb on - strand at 745.638 kb on - strand at 745.860 kb on + strand, within Rru_A0627 at 745.861 kb on - strand, within Rru_A0627 at 745.861 kb on - strand, within Rru_A0627 at 745.861 kb on - strand, within Rru_A0627 at 745.861 kb on - strand, within Rru_A0627 at 745.862 kb on + strand, within Rru_A0627 at 745.863 kb on - strand, within Rru_A0627 at 745.863 kb on - strand, within Rru_A0627 at 745.963 kb on - strand, within Rru_A0627 at 745.965 kb on - strand, within Rru_A0627 at 746.112 kb on + strand, within Rru_A0627 at 746.113 kb on - strand, within Rru_A0627 at 746.114 kb on + strand, within Rru_A0627 at 746.114 kb on + strand, within Rru_A0627 at 746.114 kb on + strand, within Rru_A0627 at 746.115 kb on - strand, within Rru_A0627 at 746.115 kb on - strand, within Rru_A0627 at 746.145 kb on - strand, within Rru_A0627 at 746.145 kb on - strand, within Rru_A0627 at 746.299 kb on - strand, within Rru_A0627 at 746.299 kb on - strand, within Rru_A0627 at 746.388 kb on + strand, within Rru_A0627 at 746.388 kb on + strand, within Rru_A0627 at 746.388 kb on + strand, within Rru_A0627 at 746.388 kb on + strand, within Rru_A0627 at 746.389 kb on - strand, within Rru_A0627 at 746.389 kb on - strand, within Rru_A0627 at 746.389 kb on - strand, within Rru_A0627 at 746.390 kb on + strand, within Rru_A0627 at 746.391 kb on - strand, within Rru_A0627 at 746.391 kb on - strand, within Rru_A0627 at 746.391 kb on - strand, within Rru_A0627 at 746.391 kb on - strand, within Rru_A0627 at 746.412 kb on + strand at 746.412 kb on + strand at 746.412 kb on + strand at 746.412 kb on + strand at 746.412 kb on + strand at 746.412 kb on + strand at 746.412 kb on + strand at 746.413 kb on - strand at 746.413 kb on - strand at 746.550 kb on + strand at 747.017 kb on + strand, within Rru_A0628 at 747.017 kb on + strand, within Rru_A0628 at 747.018 kb on - strand, within Rru_A0628 at 747.019 kb on + strand, within Rru_A0628 at 747.019 kb on + strand, within Rru_A0628 at 747.019 kb on + strand, within Rru_A0628 at 747.020 kb on - strand, within Rru_A0628 at 747.020 kb on - strand, within Rru_A0628 at 747.236 kb on + strand, within Rru_A0628 at 747.237 kb on - strand, within Rru_A0628 at 747.237 kb on - strand, within Rru_A0628 at 747.237 kb on - strand, within Rru_A0628
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 745,551 - +1.6 745,553 - +0.0 745,579 - -1.0 745,614 + +0.6 745,638 - -1.0 745,638 - -1.0 745,860 + Rru_A0627 0.30 +2.0 745,861 - Rru_A0627 0.30 -0.6 745,861 - Rru_A0627 0.30 +0.0 745,861 - Rru_A0627 0.30 -1.3 745,861 - Rru_A0627 0.30 +0.0 745,862 + Rru_A0627 0.30 +0.0 745,863 - Rru_A0627 0.30 +1.0 745,863 - Rru_A0627 0.30 +0.0 745,963 - Rru_A0627 0.41 +0.0 745,965 - Rru_A0627 0.41 +0.0 746,112 + Rru_A0627 0.57 -0.5 746,113 - Rru_A0627 0.57 -1.6 746,114 + Rru_A0627 0.57 +0.0 746,114 + Rru_A0627 0.57 +0.0 746,114 + Rru_A0627 0.57 +0.0 746,115 - Rru_A0627 0.58 +1.6 746,115 - Rru_A0627 0.58 +0.0 746,145 - Rru_A0627 0.61 -1.0 746,145 - Rru_A0627 0.61 +0.0 746,299 - Rru_A0627 0.78 +0.0 746,299 - Rru_A0627 0.78 +0.0 746,388 + Rru_A0627 0.88 +0.5 746,388 + Rru_A0627 0.88 -1.0 746,388 + Rru_A0627 0.88 -1.0 746,388 + Rru_A0627 0.88 +0.0 746,389 - Rru_A0627 0.88 +1.0 746,389 - Rru_A0627 0.88 -0.4 746,389 - Rru_A0627 0.88 -0.4 746,390 + Rru_A0627 0.88 -1.0 746,391 - Rru_A0627 0.88 -1.0 746,391 - Rru_A0627 0.88 +0.0 746,391 - Rru_A0627 0.88 +0.0 746,391 - Rru_A0627 0.88 -2.6 746,412 + +0.0 746,412 + -1.6 746,412 + +0.8 746,412 + -0.9 746,412 + -1.1 746,412 + -1.6 746,412 + +0.0 746,413 - +0.0 746,413 - +0.6 746,550 + +0.0 747,017 + Rru_A0628 0.38 +0.8 747,017 + Rru_A0628 0.38 +0.0 747,018 - Rru_A0628 0.39 +0.0 747,019 + Rru_A0628 0.39 +0.0 747,019 + Rru_A0628 0.39 +1.3 747,019 + Rru_A0628 0.39 +0.0 747,020 - Rru_A0628 0.39 +1.4 747,020 - Rru_A0628 0.39 +0.0 747,236 + Rru_A0628 0.55 +1.2 747,237 - Rru_A0628 0.55 -1.4 747,237 - Rru_A0628 0.55 +0.0 747,237 - Rru_A0628 0.55 +1.6
Or see this region's nucleotide sequence