Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0622

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0621 and Rru_A0622 overlap by 26 nucleotidesRru_A0622 and Rru_A0623 are separated by 4 nucleotides Rru_A0621: Rru_A0621 - Magnesium-chelatase, subunit H (NCBI), at 735,106 to 738,834 _A0621 Rru_A0622: Rru_A0622 - Light-independent protochlorophyllide reductase, B subunit (NCBI), at 738,809 to 740,449 _A0622 Rru_A0623: Rru_A0623 - Light-independent protochlorophyllide reductase, N subunit (NCBI), at 740,454 to 741,776 _A0623 Position (kb) 738 739 740 741Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 737.860 kb on - strand, within Rru_A0621at 737.861 kb on + strand, within Rru_A0621at 737.861 kb on + strand, within Rru_A0621at 737.861 kb on + strand, within Rru_A0621at 737.862 kb on - strand, within Rru_A0621at 737.862 kb on - strand, within Rru_A0621at 737.939 kb on + strand, within Rru_A0621at 737.939 kb on + strand, within Rru_A0621at 737.939 kb on + strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 738.033 kb on - strand, within Rru_A0621at 738.057 kb on + strand, within Rru_A0621at 738.057 kb on + strand, within Rru_A0621at 738.058 kb on - strand, within Rru_A0621at 738.058 kb on - strand, within Rru_A0621at 738.059 kb on + strand, within Rru_A0621at 738.059 kb on + strand, within Rru_A0621at 738.162 kb on - strand, within Rru_A0621at 738.162 kb on - strand, within Rru_A0621at 738.162 kb on - strand, within Rru_A0621at 738.265 kb on - strand, within Rru_A0621at 738.265 kb on - strand, within Rru_A0621at 738.317 kb on + strand, within Rru_A0621at 738.318 kb on - strand, within Rru_A0621at 738.591 kb on + strandat 738.591 kb on + strandat 738.591 kb on + strandat 738.591 kb on + strandat 738.592 kb on - strandat 738.713 kb on - strandat 738.837 kb on + strandat 738.837 kb on + strandat 738.838 kb on - strandat 739.328 kb on - strand, within Rru_A0622at 739.398 kb on + strand, within Rru_A0622at 739.398 kb on + strand, within Rru_A0622at 739.399 kb on - strand, within Rru_A0622at 739.462 kb on - strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.581 kb on + strand, within Rru_A0622at 739.949 kb on - strand, within Rru_A0622at 739.949 kb on - strand, within Rru_A0622at 739.949 kb on - strand, within Rru_A0622at 739.949 kb on - strand, within Rru_A0622at 739.949 kb on - strand, within Rru_A0622at 739.949 kb on - strand, within Rru_A0622at 740.037 kb on + strand, within Rru_A0622at 740.077 kb on - strand, within Rru_A0622at 740.337 kb on + strandat 740.337 kb on + strandat 740.337 kb on + strandat 740.337 kb on + strandat 740.338 kb on - strandat 740.367 kb on + strandat 740.367 kb on + strandat 740.367 kb on + strandat 740.367 kb on + strandat 740.368 kb on - strandat 740.368 kb on - strandat 740.368 kb on - strandat 740.368 kb on - strandat 740.427 kb on + strandat 740.427 kb on + strandat 740.427 kb on + strandat 740.427 kb on + strandat 740.427 kb on + strandat 740.428 kb on - strandat 740.428 kb on - strandat 740.428 kb on - strandat 740.428 kb on - strandat 740.428 kb on - strandat 740.428 kb on - strandat 740.456 kb on - strandat 740.456 kb on - strandat 740.525 kb on - strandat 741.308 kb on - strand, within Rru_A0623

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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737,860 - Rru_A0621 0.74 +0.0
737,861 + Rru_A0621 0.74 -1.0
737,861 + Rru_A0621 0.74 -1.0
737,861 + Rru_A0621 0.74 -1.6
737,862 - Rru_A0621 0.74 +0.0
737,862 - Rru_A0621 0.74 +0.0
737,939 + Rru_A0621 0.76 +0.0
737,939 + Rru_A0621 0.76 +0.0
737,939 + Rru_A0621 0.76 +0.0
737,940 - Rru_A0621 0.76 -1.3
737,940 - Rru_A0621 0.76 -1.0
737,940 - Rru_A0621 0.76 +0.0
737,940 - Rru_A0621 0.76 -2.1
737,940 - Rru_A0621 0.76 -0.6
738,033 - Rru_A0621 0.78 +0.0
738,057 + Rru_A0621 0.79 +0.0
738,057 + Rru_A0621 0.79 +0.0
738,058 - Rru_A0621 0.79 -1.0
738,058 - Rru_A0621 0.79 -1.6
738,059 + Rru_A0621 0.79 -1.6
738,059 + Rru_A0621 0.79 +0.0
738,162 - Rru_A0621 0.82 +0.0
738,162 - Rru_A0621 0.82 +0.0
738,162 - Rru_A0621 0.82 -1.0
738,265 - Rru_A0621 0.85 +0.0
738,265 - Rru_A0621 0.85 +0.0
738,317 + Rru_A0621 0.86 +0.0
738,318 - Rru_A0621 0.86 +0.0
738,591 + +0.0
738,591 + -1.6
738,591 + -1.0
738,591 + +0.0
738,592 - -2.6
738,713 - +0.0
738,837 + -0.3
738,837 + +2.0
738,838 - -2.3
739,328 - Rru_A0622 0.32 +0.0
739,398 + Rru_A0622 0.36 -1.3
739,398 + Rru_A0622 0.36 +1.6
739,399 - Rru_A0622 0.36 -1.4
739,462 - Rru_A0622 0.40 -1.3
739,473 + Rru_A0622 0.40 -1.3
739,473 + Rru_A0622 0.40 +0.0
739,473 + Rru_A0622 0.40 +0.0
739,473 + Rru_A0622 0.40 +0.0
739,473 + Rru_A0622 0.40 +0.0
739,473 + Rru_A0622 0.40 -0.9
739,473 + Rru_A0622 0.40 -1.6
739,473 + Rru_A0622 0.40 -1.3
739,474 - Rru_A0622 0.41 -1.0
739,474 - Rru_A0622 0.41 +0.3
739,474 - Rru_A0622 0.41 +0.0
739,474 - Rru_A0622 0.41 +0.0
739,474 - Rru_A0622 0.41 -1.0
739,581 + Rru_A0622 0.47 +0.8
739,949 - Rru_A0622 0.69 +0.0
739,949 - Rru_A0622 0.69 +0.0
739,949 - Rru_A0622 0.69 -1.6
739,949 - Rru_A0622 0.69 -1.0
739,949 - Rru_A0622 0.69 +0.0
739,949 - Rru_A0622 0.69 -2.0
740,037 + Rru_A0622 0.75 -1.0
740,077 - Rru_A0622 0.77 -1.0
740,337 + +0.0
740,337 + -0.5
740,337 + -1.3
740,337 + -2.6
740,338 - -2.6
740,367 + -0.3
740,367 + +0.0
740,367 + -1.6
740,367 + +0.6
740,368 - +0.0
740,368 - -1.0
740,368 - +0.0
740,368 - -0.7
740,427 + +0.0
740,427 + +0.0
740,427 + +0.0
740,427 + +0.0
740,427 + -1.0
740,428 - +0.0
740,428 - -0.7
740,428 - -1.0
740,428 - -2.8
740,428 - -1.0
740,428 - +0.0
740,456 - +1.5
740,456 - +0.0
740,525 - +0.0
741,308 - Rru_A0623 0.65 +0.0

Or see this region's nucleotide sequence