Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0612 and Rru_A0613 are separated by 335 nucleotides Rru_A0613 and Rru_A0614 are separated by 38 nucleotides
Rru_A0612: Rru_A0612 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI), at 724,727 to 727,912
_A0612
Rru_A0613: Rru_A0613 - Bacteriochlorophyll 4-vinyl reductase (NCBI), at 728,248 to 728,883
_A0613
Rru_A0614: Rru_A0614 - hypothetical protein (NCBI), at 728,922 to 729,809
_A0614
Position (kb) 728
729 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 727.796 kb on - strand at 727.796 kb on - strand at 727.796 kb on - strand at 727.879 kb on + strand at 728.100 kb on - strand at 728.144 kb on + strand at 728.384 kb on + strand, within Rru_A0613 at 728.387 kb on + strand, within Rru_A0613 at 728.387 kb on + strand, within Rru_A0613 at 728.387 kb on + strand, within Rru_A0613 at 728.606 kb on + strand, within Rru_A0613 at 728.738 kb on + strand, within Rru_A0613 at 728.739 kb on - strand, within Rru_A0613 at 728.941 kb on - strand at 729.067 kb on + strand, within Rru_A0614 at 729.067 kb on + strand, within Rru_A0614 at 729.067 kb on + strand, within Rru_A0614 at 729.067 kb on + strand, within Rru_A0614 at 729.078 kb on + strand, within Rru_A0614 at 729.078 kb on + strand, within Rru_A0614 at 729.105 kb on + strand, within Rru_A0614 at 729.290 kb on + strand, within Rru_A0614 at 729.291 kb on - strand, within Rru_A0614 at 729.291 kb on - strand, within Rru_A0614 at 729.291 kb on - strand, within Rru_A0614 at 729.462 kb on + strand, within Rru_A0614 at 729.462 kb on + strand, within Rru_A0614 at 729.463 kb on - strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.565 kb on + strand, within Rru_A0614 at 729.566 kb on - strand, within Rru_A0614 at 729.566 kb on - strand, within Rru_A0614 at 729.566 kb on - strand, within Rru_A0614 at 729.619 kb on + strand, within Rru_A0614 at 729.619 kb on + strand, within Rru_A0614 at 729.620 kb on - strand, within Rru_A0614 at 729.716 kb on + strand, within Rru_A0614 at 729.717 kb on - strand, within Rru_A0614 at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.779 kb on + strand at 729.780 kb on - strand at 729.780 kb on - strand at 729.780 kb on - strand at 729.780 kb on - strand at 729.780 kb on - strand at 729.781 kb on + strand at 729.782 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 727,796 - -1.0 727,796 - +0.8 727,796 - +0.0 727,879 + -1.3 728,100 - +0.0 728,144 + +3.7 728,384 + Rru_A0613 0.21 -2.6 728,387 + Rru_A0613 0.22 +0.0 728,387 + Rru_A0613 0.22 -2.8 728,387 + Rru_A0613 0.22 -0.2 728,606 + Rru_A0613 0.56 -1.6 728,738 + Rru_A0613 0.77 +0.0 728,739 - Rru_A0613 0.77 +0.0 728,941 - +1.7 729,067 + Rru_A0614 0.16 -1.0 729,067 + Rru_A0614 0.16 +0.2 729,067 + Rru_A0614 0.16 +0.0 729,067 + Rru_A0614 0.16 +0.9 729,078 + Rru_A0614 0.18 -1.0 729,078 + Rru_A0614 0.18 +0.0 729,105 + Rru_A0614 0.21 +0.0 729,290 + Rru_A0614 0.41 +0.4 729,291 - Rru_A0614 0.42 +0.0 729,291 - Rru_A0614 0.42 +0.0 729,291 - Rru_A0614 0.42 +0.0 729,462 + Rru_A0614 0.61 -1.0 729,462 + Rru_A0614 0.61 +0.6 729,463 - Rru_A0614 0.61 -1.6 729,565 + Rru_A0614 0.72 +0.0 729,565 + Rru_A0614 0.72 +0.0 729,565 + Rru_A0614 0.72 +0.0 729,565 + Rru_A0614 0.72 +0.0 729,565 + Rru_A0614 0.72 +1.0 729,566 - Rru_A0614 0.73 +0.2 729,566 - Rru_A0614 0.73 +0.0 729,566 - Rru_A0614 0.73 -2.0 729,619 + Rru_A0614 0.78 +0.6 729,619 + Rru_A0614 0.78 -1.0 729,620 - Rru_A0614 0.79 -1.0 729,716 + Rru_A0614 0.89 +0.5 729,717 - Rru_A0614 0.90 -1.6 729,779 + +0.0 729,779 + +1.3 729,779 + +0.0 729,779 + +0.0 729,779 + +0.0 729,779 + +0.0 729,779 + +0.0 729,780 - +1.2 729,780 - -0.8 729,780 - +0.0 729,780 - -0.4 729,780 - +0.2 729,781 + +0.0 729,782 - +0.0
Or see this region's nucleotide sequence