Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0610 and Rru_A0611 are separated by 222 nucleotides
Rru_A0610: Rru_A0610 - hypothetical protein (NCBI), at 721,791 to 722,924
_A0610
Rru_A0611: Rru_A0611 - hypothetical protein (NCBI), at 723,147 to 723,665
_A0611
Position (kb) 723
724 Strain fitness (log2 ratio) -1
0
1
2 at 722.255 kb on + strand, within Rru_A0610 at 722.255 kb on + strand, within Rru_A0610 at 722.256 kb on - strand, within Rru_A0610 at 722.264 kb on + strand, within Rru_A0610 at 722.601 kb on + strand, within Rru_A0610 at 722.689 kb on - strand, within Rru_A0610 at 722.689 kb on - strand, within Rru_A0610 at 722.689 kb on - strand, within Rru_A0610 at 722.764 kb on - strand, within Rru_A0610 at 722.871 kb on + strand at 722.871 kb on + strand at 722.871 kb on + strand at 722.872 kb on - strand at 722.922 kb on + strand at 722.922 kb on + strand at 722.922 kb on + strand at 722.922 kb on + strand at 722.922 kb on + strand at 722.922 kb on + strand at 722.923 kb on - strand at 722.923 kb on - strand at 723.358 kb on - strand, within Rru_A0611 at 723.426 kb on + strand, within Rru_A0611 at 723.426 kb on + strand, within Rru_A0611 at 723.426 kb on + strand, within Rru_A0611 at 723.427 kb on - strand, within Rru_A0611 at 723.427 kb on - strand, within Rru_A0611 at 723.428 kb on + strand, within Rru_A0611 at 723.429 kb on - strand, within Rru_A0611 at 723.429 kb on - strand, within Rru_A0611 at 723.663 kb on + strand at 723.673 kb on - strand at 723.673 kb on - strand at 723.673 kb on - strand at 723.673 kb on - strand at 724.057 kb on - strand at 724.057 kb on - strand at 724.057 kb on - strand at 724.057 kb on - strand at 724.057 kb on - strand at 724.057 kb on - strand at 724.068 kb on - strand at 724.135 kb on - strand at 724.135 kb on - strand at 724.135 kb on - strand at 724.337 kb on + strand at 724.540 kb on + strand at 724.551 kb on + strand at 724.604 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 722,255 + Rru_A0610 0.41 +0.0 722,255 + Rru_A0610 0.41 +0.0 722,256 - Rru_A0610 0.41 +0.0 722,264 + Rru_A0610 0.42 +0.0 722,601 + Rru_A0610 0.71 +0.8 722,689 - Rru_A0610 0.79 +0.0 722,689 - Rru_A0610 0.79 -1.6 722,689 - Rru_A0610 0.79 +0.0 722,764 - Rru_A0610 0.86 +0.0 722,871 + +0.0 722,871 + +0.0 722,871 + -1.6 722,872 - +0.0 722,922 + +1.4 722,922 + +1.4 722,922 + +0.8 722,922 + +1.2 722,922 + +2.4 722,922 + +1.8 722,923 - +0.0 722,923 - +1.6 723,358 - Rru_A0611 0.41 +0.0 723,426 + Rru_A0611 0.54 +0.8 723,426 + Rru_A0611 0.54 +0.0 723,426 + Rru_A0611 0.54 +0.0 723,427 - Rru_A0611 0.54 +0.0 723,427 - Rru_A0611 0.54 +0.0 723,428 + Rru_A0611 0.54 -1.0 723,429 - Rru_A0611 0.54 +1.4 723,429 - Rru_A0611 0.54 -0.5 723,663 + +1.6 723,673 - +0.0 723,673 - +0.8 723,673 - +1.1 723,673 - +2.0 724,057 - -0.8 724,057 - +2.4 724,057 - +0.0 724,057 - +0.0 724,057 - +0.5 724,057 - +0.0 724,068 - +0.5 724,135 - -0.1 724,135 - +0.0 724,135 - +0.4 724,337 + +1.0 724,540 + +1.0 724,551 + +0.0 724,604 + +0.9
Or see this region's nucleotide sequence