Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0605 and Rru_A0606 overlap by 1 nucleotides Rru_A0606 and Rru_A0607 are separated by 38 nucleotides Rru_A0607 and Rru_A0608 are separated by 218 nucleotides
Rru_A0605: Rru_A0605 - hypothetical protein (NCBI), at 717,390 to 718,445
_A0605
Rru_A0606: Rru_A0606 - Transcriptional Regulator, LysR family (NCBI), at 718,445 to 719,353
_A0606
Rru_A0607: Rru_A0607 - Adenine phosphoribosyl transferase (NCBI), at 719,392 to 719,907
_A0607
Rru_A0608: Rru_A0608 - TRAP transporter solute receptor, TAXI family (NCBI), at 720,126 to 721,106
_A0608
Position (kb) 719
720 Strain fitness (log2 ratio) -1
0
1
2 at 718.474 kb on + strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.821 kb on - strand, within Rru_A0606 at 719.633 kb on + strand, within Rru_A0607 at 719.634 kb on - strand, within Rru_A0607 at 719.634 kb on - strand, within Rru_A0607 at 719.847 kb on - strand, within Rru_A0607 at 719.890 kb on - strand at 719.947 kb on + strand at 719.947 kb on + strand at 720.255 kb on + strand, within Rru_A0608 at 720.255 kb on + strand, within Rru_A0608 at 720.255 kb on + strand, within Rru_A0608 at 720.255 kb on + strand, within Rru_A0608 at 720.442 kb on - strand, within Rru_A0608 at 720.720 kb on + strand, within Rru_A0608 at 720.720 kb on + strand, within Rru_A0608 at 720.720 kb on + strand, within Rru_A0608 at 720.720 kb on + strand, within Rru_A0608 at 720.721 kb on - strand, within Rru_A0608 at 720.721 kb on - strand, within Rru_A0608 at 720.721 kb on - strand, within Rru_A0608 at 720.721 kb on - strand, within Rru_A0608 at 720.834 kb on + strand, within Rru_A0608 at 720.834 kb on + strand, within Rru_A0608 at 720.834 kb on + strand, within Rru_A0608 at 720.834 kb on + strand, within Rru_A0608 at 720.835 kb on - strand, within Rru_A0608 at 720.864 kb on + strand, within Rru_A0608 at 720.884 kb on + strand, within Rru_A0608
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 718,474 + -1.0 718,475 - +0.0 718,475 - +0.0 718,475 - +2.2 718,475 - -1.0 718,821 - Rru_A0606 0.41 +1.4 719,633 + Rru_A0607 0.47 +0.0 719,634 - Rru_A0607 0.47 +2.0 719,634 - Rru_A0607 0.47 +1.6 719,847 - Rru_A0607 0.88 +0.0 719,890 - +1.2 719,947 + +1.2 719,947 + +1.4 720,255 + Rru_A0608 0.13 +1.3 720,255 + Rru_A0608 0.13 +0.0 720,255 + Rru_A0608 0.13 -0.3 720,255 + Rru_A0608 0.13 +1.6 720,442 - Rru_A0608 0.32 +0.9 720,720 + Rru_A0608 0.61 -1.0 720,720 + Rru_A0608 0.61 +0.5 720,720 + Rru_A0608 0.61 +1.0 720,720 + Rru_A0608 0.61 -1.0 720,721 - Rru_A0608 0.61 -1.0 720,721 - Rru_A0608 0.61 -0.3 720,721 - Rru_A0608 0.61 +1.0 720,721 - Rru_A0608 0.61 +1.3 720,834 + Rru_A0608 0.72 +0.0 720,834 + Rru_A0608 0.72 +0.0 720,834 + Rru_A0608 0.72 +0.0 720,834 + Rru_A0608 0.72 +1.2 720,835 - Rru_A0608 0.72 +0.1 720,864 + Rru_A0608 0.75 +0.0 720,884 + Rru_A0608 0.77 +1.2
Or see this region's nucleotide sequence