Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0579 and Rru_A0580 are separated by 91 nucleotides Rru_A0580 and Rru_A0581 are separated by 173 nucleotides
Rru_A0579: Rru_A0579 - Glycosyl transferase, group 1 (NCBI), at 688,229 to 689,302
_A0579
Rru_A0580: Rru_A0580 - OsmC-like protein (NCBI), at 689,394 to 689,828
_A0580
Rru_A0581: Rru_A0581 - Three-deoxy-D-manno-octulosonic-acidtransferase-like (NCBI), at 690,002 to 691,318
_A0581
Position (kb) 689
690 Strain fitness (log2 ratio) -1
0
1
2 at 688.485 kb on + strand, within Rru_A0579 at 688.485 kb on + strand, within Rru_A0579 at 688.486 kb on - strand, within Rru_A0579 at 688.500 kb on - strand, within Rru_A0579 at 688.556 kb on + strand, within Rru_A0579 at 688.595 kb on + strand, within Rru_A0579 at 688.596 kb on - strand, within Rru_A0579 at 688.596 kb on - strand, within Rru_A0579 at 688.596 kb on - strand, within Rru_A0579 at 688.790 kb on + strand, within Rru_A0579 at 688.790 kb on + strand, within Rru_A0579 at 688.790 kb on + strand, within Rru_A0579 at 688.791 kb on - strand, within Rru_A0579 at 688.791 kb on - strand, within Rru_A0579 at 688.955 kb on + strand, within Rru_A0579 at 688.956 kb on - strand, within Rru_A0579 at 688.956 kb on - strand, within Rru_A0579 at 689.054 kb on + strand, within Rru_A0579 at 689.301 kb on - strand at 689.311 kb on + strand at 689.311 kb on + strand at 689.311 kb on + strand at 689.311 kb on + strand at 689.311 kb on + strand at 689.312 kb on - strand at 689.312 kb on - strand at 689.312 kb on - strand at 689.312 kb on - strand at 689.313 kb on + strand at 689.313 kb on + strand at 689.313 kb on + strand at 689.313 kb on + strand at 689.314 kb on - strand at 689.314 kb on - strand at 689.484 kb on + strand, within Rru_A0580 at 689.484 kb on + strand, within Rru_A0580 at 689.484 kb on + strand, within Rru_A0580 at 689.484 kb on + strand, within Rru_A0580 at 689.601 kb on - strand, within Rru_A0580 at 689.826 kb on + strand at 689.826 kb on + strand at 689.826 kb on + strand at 689.826 kb on + strand at 689.826 kb on + strand at 689.826 kb on + strand at 689.827 kb on - strand at 689.827 kb on - strand at 689.966 kb on + strand at 689.966 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 688,485 + Rru_A0579 0.24 +0.0 688,485 + Rru_A0579 0.24 +1.7 688,486 - Rru_A0579 0.24 +0.9 688,500 - Rru_A0579 0.25 +0.0 688,556 + Rru_A0579 0.30 +0.9 688,595 + Rru_A0579 0.34 +0.0 688,596 - Rru_A0579 0.34 +1.2 688,596 - Rru_A0579 0.34 +0.6 688,596 - Rru_A0579 0.34 +0.5 688,790 + Rru_A0579 0.52 +1.2 688,790 + Rru_A0579 0.52 +0.0 688,790 + Rru_A0579 0.52 +1.6 688,791 - Rru_A0579 0.52 +0.0 688,791 - Rru_A0579 0.52 +2.0 688,955 + Rru_A0579 0.68 +0.6 688,956 - Rru_A0579 0.68 +1.7 688,956 - Rru_A0579 0.68 -0.3 689,054 + Rru_A0579 0.77 +0.3 689,301 - +1.3 689,311 + +1.0 689,311 + +0.0 689,311 + +0.0 689,311 + +1.4 689,311 + +0.0 689,312 - -1.0 689,312 - +0.0 689,312 - +1.0 689,312 - +0.8 689,313 + +1.8 689,313 + +0.0 689,313 + +1.4 689,313 + +1.8 689,314 - +1.1 689,314 - +0.2 689,484 + Rru_A0580 0.21 +0.2 689,484 + Rru_A0580 0.21 +0.0 689,484 + Rru_A0580 0.21 -1.0 689,484 + Rru_A0580 0.21 +0.0 689,601 - Rru_A0580 0.48 -1.6 689,826 + +2.0 689,826 + +0.0 689,826 + +1.1 689,826 + +0.8 689,826 + +0.0 689,826 + +1.8 689,827 - +0.0 689,827 - +0.0 689,966 + +0.8 689,966 + +0.0
Or see this region's nucleotide sequence