Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0574 and Rru_A0575 are separated by 123 nucleotides Rru_A0575 and Rru_A0576 are separated by 111 nucleotides
Rru_A0574: Rru_A0574 - Carboxylyase-related protein (NCBI), at 680,792 to 682,315
_A0574
Rru_A0575: Rru_A0575 - Peptidase U62, modulator of DNA gyrase (NCBI), at 682,439 to 683,797
_A0575
Rru_A0576: Rru_A0576 - chemotaxis sensory transducer (NCBI), at 683,909 to 685,975
_A0576
Position (kb) 682
683
684 Strain fitness (log2 ratio) -1
0
1
2 at 681.698 kb on + strand, within Rru_A0574 at 681.899 kb on - strand, within Rru_A0574 at 682.313 kb on + strand at 682.313 kb on + strand at 682.314 kb on - strand at 682.314 kb on - strand at 682.332 kb on - strand at 682.332 kb on - strand at 682.332 kb on - strand at 682.369 kb on + strand at 682.369 kb on + strand at 682.369 kb on + strand at 682.369 kb on + strand at 682.370 kb on - strand at 682.370 kb on - strand at 682.370 kb on - strand at 682.370 kb on - strand at 682.370 kb on - strand at 682.370 kb on - strand at 682.373 kb on + strand at 682.374 kb on - strand at 682.374 kb on - strand at 682.962 kb on - strand, within Rru_A0575 at 683.034 kb on - strand, within Rru_A0575 at 683.034 kb on - strand, within Rru_A0575 at 683.561 kb on + strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.609 kb on + strand, within Rru_A0575 at 683.833 kb on - strand at 683.833 kb on - strand at 683.866 kb on + strand at 684.306 kb on - strand, within Rru_A0576 at 684.384 kb on - strand, within Rru_A0576 at 684.428 kb on + strand, within Rru_A0576 at 684.428 kb on + strand, within Rru_A0576 at 684.429 kb on - strand, within Rru_A0576
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 681,698 + Rru_A0574 0.59 +0.0 681,899 - Rru_A0574 0.73 +0.0 682,313 + +1.3 682,313 + +1.3 682,314 - +1.1 682,314 - +0.7 682,332 - +0.8 682,332 - +0.0 682,332 - +0.0 682,369 + +0.0 682,369 + -1.0 682,369 + +1.6 682,369 + +1.3 682,370 - +1.6 682,370 - +1.2 682,370 - +1.3 682,370 - -1.0 682,370 - +1.1 682,370 - +0.8 682,373 + +0.0 682,374 - +0.0 682,374 - +0.0 682,962 - Rru_A0575 0.38 +1.0 683,034 - Rru_A0575 0.44 +1.5 683,034 - Rru_A0575 0.44 +1.7 683,561 + Rru_A0575 0.83 +1.0 683,562 - Rru_A0575 0.83 +0.0 683,562 - Rru_A0575 0.83 +0.7 683,562 - Rru_A0575 0.83 +2.3 683,562 - Rru_A0575 0.83 +1.3 683,562 - Rru_A0575 0.83 +1.9 683,562 - Rru_A0575 0.83 +1.0 683,562 - Rru_A0575 0.83 +1.3 683,562 - Rru_A0575 0.83 +0.5 683,562 - Rru_A0575 0.83 +0.0 683,562 - Rru_A0575 0.83 +0.0 683,609 + Rru_A0575 0.86 +2.1 683,833 - +0.0 683,833 - +0.0 683,866 + +1.0 684,306 - Rru_A0576 0.19 +1.0 684,384 - Rru_A0576 0.23 +0.0 684,428 + Rru_A0576 0.25 +0.0 684,428 + Rru_A0576 0.25 +0.0 684,429 - Rru_A0576 0.25 +1.9
Or see this region's nucleotide sequence