Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0570 and Rru_A0571 are separated by 92 nucleotides Rru_A0571 and Rru_A0572 are separated by 130 nucleotides
Rru_A0570: Rru_A0570 - Glutamate--cysteine ligase (NCBI), at 676,783 to 678,153
_A0570
Rru_A0571: Rru_A0571 - hypothetical protein (NCBI), at 678,246 to 678,989
_A0571
Rru_A0572: Rru_A0572 - 4-hydroxybenzoate polyprenyl transferase (NCBI), at 679,120 to 680,043
_A0572
Position (kb) 678
679 Strain fitness (log2 ratio) -1
0
1
2
3 at 678.248 kb on - strand at 678.347 kb on + strand, within Rru_A0571 at 678.347 kb on + strand, within Rru_A0571 at 678.347 kb on + strand, within Rru_A0571 at 678.348 kb on - strand, within Rru_A0571 at 678.348 kb on - strand, within Rru_A0571 at 678.426 kb on + strand, within Rru_A0571 at 678.427 kb on - strand, within Rru_A0571 at 678.522 kb on + strand, within Rru_A0571 at 678.522 kb on + strand, within Rru_A0571 at 678.523 kb on - strand, within Rru_A0571 at 678.523 kb on - strand, within Rru_A0571 at 678.700 kb on + strand, within Rru_A0571 at 678.700 kb on + strand, within Rru_A0571 at 678.701 kb on - strand, within Rru_A0571 at 678.701 kb on - strand, within Rru_A0571 at 678.701 kb on - strand, within Rru_A0571 at 678.899 kb on - strand, within Rru_A0571 at 678.899 kb on - strand, within Rru_A0571 at 678.958 kb on + strand at 678.958 kb on + strand at 678.959 kb on - strand at 678.959 kb on - strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.040 kb on + strand at 679.047 kb on + strand at 679.047 kb on + strand at 679.049 kb on + strand at 679.049 kb on + strand at 679.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 678,248 - +0.0 678,347 + Rru_A0571 0.14 +0.0 678,347 + Rru_A0571 0.14 +0.0 678,347 + Rru_A0571 0.14 +0.0 678,348 - Rru_A0571 0.14 +3.0 678,348 - Rru_A0571 0.14 +2.5 678,426 + Rru_A0571 0.24 +2.1 678,427 - Rru_A0571 0.24 +2.7 678,522 + Rru_A0571 0.37 +2.0 678,522 + Rru_A0571 0.37 +2.1 678,523 - Rru_A0571 0.37 +2.3 678,523 - Rru_A0571 0.37 +2.8 678,700 + Rru_A0571 0.61 +0.0 678,700 + Rru_A0571 0.61 +1.9 678,701 - Rru_A0571 0.61 +2.6 678,701 - Rru_A0571 0.61 +0.0 678,701 - Rru_A0571 0.61 +2.7 678,899 - Rru_A0571 0.88 +1.6 678,899 - Rru_A0571 0.88 +2.1 678,958 + +1.7 678,958 + +2.1 678,959 - +1.0 678,959 - +2.0 679,035 + +0.0 679,035 + +0.7 679,035 + +0.0 679,035 + +0.0 679,035 + +1.5 679,036 - +2.1 679,036 - +0.0 679,036 - +1.7 679,036 - +0.0 679,036 - +2.0 679,040 + +0.0 679,047 + +0.4 679,047 + +0.4 679,049 + +2.2 679,049 + +0.0 679,050 - +2.8
Or see this region's nucleotide sequence