Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0560 and Rru_A0561 overlap by 11 nucleotides Rru_A0561 and Rru_A0562 are separated by 61 nucleotides Rru_A0562 and Rru_A0563 overlap by 4 nucleotides
Rru_A0560: Rru_A0560 - Cytochrome bd ubiquinol oxidase, subunit I (NCBI), at 662,187 to 663,617
_A0560
Rru_A0561: Rru_A0561 - Cytochrome bd ubiquinol oxidase, subunit II (NCBI), at 663,607 to 664,608
_A0561
Rru_A0562: Rru_A0562 - Peptidase S1 and S6, chymotrypsin/Hap (NCBI), at 664,670 to 665,590
_A0562
Rru_A0563: Rru_A0563 - Twin-arginine translocation pathway signal (NCBI), at 665,587 to 666,852
_A0563
Position (kb) 663
664
665 Strain fitness (log2 ratio) -1
0
1
2 at 662.654 kb on + strand, within Rru_A0560 at 662.654 kb on + strand, within Rru_A0560 at 662.655 kb on - strand, within Rru_A0560 at 662.669 kb on + strand, within Rru_A0560 at 662.750 kb on + strand, within Rru_A0560 at 662.750 kb on + strand, within Rru_A0560 at 662.766 kb on + strand, within Rru_A0560 at 662.767 kb on - strand, within Rru_A0560 at 663.090 kb on + strand, within Rru_A0560 at 663.277 kb on - strand, within Rru_A0560 at 663.294 kb on + strand, within Rru_A0560 at 663.387 kb on + strand, within Rru_A0560 at 663.401 kb on + strand, within Rru_A0560 at 663.401 kb on + strand, within Rru_A0560 at 663.401 kb on + strand, within Rru_A0560 at 663.402 kb on - strand, within Rru_A0560 at 663.402 kb on - strand, within Rru_A0560 at 663.410 kb on + strand, within Rru_A0560 at 663.472 kb on - strand, within Rru_A0560 at 663.664 kb on + strand at 663.664 kb on + strand at 663.664 kb on + strand at 663.664 kb on + strand at 663.665 kb on - strand at 663.665 kb on - strand at 663.665 kb on - strand at 663.665 kb on - strand at 663.735 kb on + strand, within Rru_A0561 at 663.736 kb on - strand, within Rru_A0561 at 663.832 kb on + strand, within Rru_A0561 at 663.832 kb on + strand, within Rru_A0561 at 663.832 kb on + strand, within Rru_A0561 at 663.856 kb on + strand, within Rru_A0561 at 663.856 kb on + strand, within Rru_A0561 at 663.856 kb on + strand, within Rru_A0561 at 663.857 kb on - strand, within Rru_A0561 at 663.857 kb on - strand, within Rru_A0561 at 663.857 kb on - strand, within Rru_A0561 at 663.857 kb on - strand, within Rru_A0561 at 664.114 kb on + strand, within Rru_A0561 at 664.116 kb on + strand, within Rru_A0561 at 664.116 kb on + strand, within Rru_A0561 at 664.116 kb on + strand, within Rru_A0561 at 664.117 kb on - strand, within Rru_A0561 at 664.117 kb on - strand, within Rru_A0561 at 664.411 kb on + strand, within Rru_A0561 at 664.411 kb on + strand, within Rru_A0561 at 664.412 kb on - strand, within Rru_A0561 at 664.412 kb on - strand, within Rru_A0561 at 664.435 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.441 kb on + strand, within Rru_A0561 at 664.442 kb on - strand, within Rru_A0561 at 664.442 kb on - strand, within Rru_A0561 at 664.442 kb on - strand, within Rru_A0561 at 664.442 kb on - strand, within Rru_A0561 at 664.443 kb on + strand, within Rru_A0561 at 664.443 kb on + strand, within Rru_A0561 at 664.443 kb on + strand, within Rru_A0561 at 664.443 kb on + strand, within Rru_A0561 at 664.443 kb on + strand, within Rru_A0561 at 664.443 kb on + strand, within Rru_A0561 at 664.444 kb on - strand, within Rru_A0561 at 664.546 kb on + strand at 664.555 kb on + strand at 664.561 kb on + strand at 664.561 kb on + strand at 664.561 kb on + strand at 664.671 kb on + strand at 664.672 kb on - strand at 664.827 kb on + strand, within Rru_A0562 at 665.067 kb on + strand, within Rru_A0562
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 662,654 + Rru_A0560 0.33 +0.0 662,654 + Rru_A0560 0.33 +1.1 662,655 - Rru_A0560 0.33 +0.0 662,669 + Rru_A0560 0.34 +0.0 662,750 + Rru_A0560 0.39 +0.0 662,750 + Rru_A0560 0.39 +0.0 662,766 + Rru_A0560 0.40 +0.0 662,767 - Rru_A0560 0.41 +0.0 663,090 + Rru_A0560 0.63 +0.0 663,277 - Rru_A0560 0.76 +0.8 663,294 + Rru_A0560 0.77 +0.0 663,387 + Rru_A0560 0.84 +0.0 663,401 + Rru_A0560 0.85 +2.0 663,401 + Rru_A0560 0.85 +0.0 663,401 + Rru_A0560 0.85 +0.0 663,402 - Rru_A0560 0.85 -1.0 663,402 - Rru_A0560 0.85 +0.0 663,410 + Rru_A0560 0.85 +2.0 663,472 - Rru_A0560 0.90 +0.8 663,664 + +0.0 663,664 + +0.5 663,664 + +1.0 663,664 + -1.0 663,665 - -1.0 663,665 - +0.0 663,665 - +1.0 663,665 - +0.0 663,735 + Rru_A0561 0.13 +1.6 663,736 - Rru_A0561 0.13 +0.2 663,832 + Rru_A0561 0.22 +2.2 663,832 + Rru_A0561 0.22 -0.2 663,832 + Rru_A0561 0.22 +0.0 663,856 + Rru_A0561 0.25 -0.7 663,856 + Rru_A0561 0.25 +0.2 663,856 + Rru_A0561 0.25 +0.0 663,857 - Rru_A0561 0.25 +0.3 663,857 - Rru_A0561 0.25 +0.0 663,857 - Rru_A0561 0.25 +0.0 663,857 - Rru_A0561 0.25 +0.0 664,114 + Rru_A0561 0.51 -1.0 664,116 + Rru_A0561 0.51 +0.0 664,116 + Rru_A0561 0.51 +0.0 664,116 + Rru_A0561 0.51 +0.0 664,117 - Rru_A0561 0.51 +0.0 664,117 - Rru_A0561 0.51 -1.2 664,411 + Rru_A0561 0.80 +0.0 664,411 + Rru_A0561 0.80 -0.3 664,412 - Rru_A0561 0.80 +0.0 664,412 - Rru_A0561 0.80 +1.1 664,435 + Rru_A0561 0.83 +0.2 664,441 + Rru_A0561 0.83 +0.0 664,441 + Rru_A0561 0.83 -0.6 664,441 + Rru_A0561 0.83 -1.0 664,441 + Rru_A0561 0.83 +0.0 664,441 + Rru_A0561 0.83 +1.8 664,441 + Rru_A0561 0.83 +1.0 664,441 + Rru_A0561 0.83 +1.6 664,441 + Rru_A0561 0.83 -1.0 664,442 - Rru_A0561 0.83 +1.0 664,442 - Rru_A0561 0.83 +0.0 664,442 - Rru_A0561 0.83 +0.0 664,442 - Rru_A0561 0.83 +0.6 664,443 + Rru_A0561 0.83 -0.2 664,443 + Rru_A0561 0.83 -1.0 664,443 + Rru_A0561 0.83 +0.6 664,443 + Rru_A0561 0.83 +0.0 664,443 + Rru_A0561 0.83 -0.1 664,443 + Rru_A0561 0.83 +0.0 664,444 - Rru_A0561 0.84 +0.5 664,546 + -1.7 664,555 + -1.0 664,561 + +0.2 664,561 + +0.0 664,561 + +0.0 664,671 + +1.0 664,672 - +1.5 664,827 + Rru_A0562 0.17 +0.0 665,067 + Rru_A0562 0.43 +1.2
Or see this region's nucleotide sequence