Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0551 and Rru_A0552 overlap by 122 nucleotides Rru_A0552 and Rru_A0553 are separated by 264 nucleotides Rru_A0553 and Rru_A0554 are separated by 175 nucleotides
Rru_A0551: Rru_A0551 - TPR domain protein (NCBI), at 651,316 to 652,941
_A0551
Rru_A0552: Rru_A0552 - GCN5-related N-acetyltransferase (NCBI), at 652,820 to 653,449
_A0552
Rru_A0553: Rru_A0553 - Response Regulator Receiver Signal Transduction Histidine Kinase (NCBI), at 653,714 to 655,036
_A0553
Rru_A0554: Rru_A0554 - Rh-like protein/ammonium transporter (NCBI), at 655,212 to 656,531
_A0554
Position (kb) 653
654
655
656 Strain fitness (log2 ratio) -1
0
1
2 at 652.761 kb on - strand, within Rru_A0551 at 652.761 kb on - strand, within Rru_A0551 at 652.821 kb on + strand at 652.821 kb on + strand at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.248 kb on - strand, within Rru_A0552 at 653.248 kb on - strand, within Rru_A0552 at 653.485 kb on + strand at 653.485 kb on + strand at 653.485 kb on + strand at 653.486 kb on - strand at 653.486 kb on - strand at 653.537 kb on + strand at 653.537 kb on + strand at 653.568 kb on + strand at 653.568 kb on + strand at 653.569 kb on - strand at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.320 kb on - strand, within Rru_A0553 at 654.320 kb on - strand, within Rru_A0553 at 654.320 kb on - strand, within Rru_A0553 at 654.321 kb on + strand, within Rru_A0553 at 654.322 kb on - strand, within Rru_A0553 at 654.555 kb on + strand, within Rru_A0553 at 654.556 kb on - strand, within Rru_A0553 at 654.556 kb on - strand, within Rru_A0553 at 654.556 kb on - strand, within Rru_A0553 at 654.621 kb on + strand, within Rru_A0553 at 654.637 kb on - strand, within Rru_A0553 at 655.084 kb on - strand at 655.179 kb on - strand at 655.213 kb on + strand at 655.687 kb on + strand, within Rru_A0554 at 655.687 kb on + strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.805 kb on + strand, within Rru_A0554 at 655.806 kb on - strand, within Rru_A0554 at 655.806 kb on - strand, within Rru_A0554
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 652,761 - Rru_A0551 0.89 -1.0 652,761 - Rru_A0551 0.89 +0.0 652,821 + +0.5 652,821 + +0.8 653,246 - Rru_A0552 0.68 +0.0 653,246 - Rru_A0552 0.68 +0.8 653,246 - Rru_A0552 0.68 +1.6 653,246 - Rru_A0552 0.68 +0.0 653,246 - Rru_A0552 0.68 +0.2 653,246 - Rru_A0552 0.68 +1.3 653,246 - Rru_A0552 0.68 +2.0 653,247 + Rru_A0552 0.68 +0.4 653,247 + Rru_A0552 0.68 +1.4 653,247 + Rru_A0552 0.68 +1.0 653,247 + Rru_A0552 0.68 +2.2 653,247 + Rru_A0552 0.68 +0.0 653,247 + Rru_A0552 0.68 +1.2 653,247 + Rru_A0552 0.68 +1.6 653,247 + Rru_A0552 0.68 -1.6 653,247 + Rru_A0552 0.68 +1.2 653,248 - Rru_A0552 0.68 +1.5 653,248 - Rru_A0552 0.68 +1.0 653,485 + +0.6 653,485 + +1.5 653,485 + +2.3 653,486 - +1.1 653,486 - +1.2 653,537 + +0.0 653,537 + +0.6 653,568 + +1.2 653,568 + +0.0 653,569 - +2.0 654,319 + Rru_A0553 0.46 -0.6 654,319 + Rru_A0553 0.46 +1.0 654,319 + Rru_A0553 0.46 -1.0 654,319 + Rru_A0553 0.46 +0.0 654,319 + Rru_A0553 0.46 +0.0 654,319 + Rru_A0553 0.46 +0.0 654,319 + Rru_A0553 0.46 +2.2 654,319 + Rru_A0553 0.46 +1.8 654,320 - Rru_A0553 0.46 +0.9 654,320 - Rru_A0553 0.46 -1.6 654,320 - Rru_A0553 0.46 +0.0 654,321 + Rru_A0553 0.46 +0.3 654,322 - Rru_A0553 0.46 +1.5 654,555 + Rru_A0553 0.64 +2.3 654,556 - Rru_A0553 0.64 +0.0 654,556 - Rru_A0553 0.64 +0.8 654,556 - Rru_A0553 0.64 +0.4 654,621 + Rru_A0553 0.69 +0.0 654,637 - Rru_A0553 0.70 +0.0 655,084 - +0.7 655,179 - +0.0 655,213 + +1.1 655,687 + Rru_A0554 0.36 +0.0 655,687 + Rru_A0554 0.36 +1.6 655,688 - Rru_A0554 0.36 +0.0 655,688 - Rru_A0554 0.36 +0.0 655,688 - Rru_A0554 0.36 +0.0 655,688 - Rru_A0554 0.36 +0.0 655,805 + Rru_A0554 0.45 +0.0 655,806 - Rru_A0554 0.45 -1.0 655,806 - Rru_A0554 0.45 +0.0
Or see this region's nucleotide sequence