Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0551

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0550 and Rru_A0551 are separated by 126 nucleotidesRru_A0551 and Rru_A0552 overlap by 122 nucleotidesRru_A0552 and Rru_A0553 are separated by 264 nucleotides Rru_A0550: Rru_A0550 - TPR repeat (NCBI), at 649,402 to 651,189 _A0550 Rru_A0551: Rru_A0551 - TPR domain protein (NCBI), at 651,316 to 652,941 _A0551 Rru_A0552: Rru_A0552 - GCN5-related N-acetyltransferase (NCBI), at 652,820 to 653,449 _A0552 Rru_A0553: Rru_A0553 - Response Regulator Receiver Signal Transduction Histidine Kinase (NCBI), at 653,714 to 655,036 _A0553 Position (kb) 651 652 653Strain fitness (log2 ratio) -1 0 1 2 3at 650.342 kb on + strand, within Rru_A0550at 650.375 kb on - strand, within Rru_A0550at 650.450 kb on + strand, within Rru_A0550at 650.544 kb on + strand, within Rru_A0550at 650.545 kb on - strand, within Rru_A0550at 650.545 kb on - strand, within Rru_A0550at 650.546 kb on + strand, within Rru_A0550at 650.546 kb on + strand, within Rru_A0550at 650.546 kb on + strand, within Rru_A0550at 650.546 kb on + strand, within Rru_A0550at 650.546 kb on + strand, within Rru_A0550at 650.547 kb on - strand, within Rru_A0550at 651.749 kb on - strand, within Rru_A0551at 651.749 kb on - strand, within Rru_A0551at 651.749 kb on - strand, within Rru_A0551at 651.793 kb on + strand, within Rru_A0551at 651.793 kb on + strand, within Rru_A0551at 651.793 kb on + strand, within Rru_A0551at 651.793 kb on + strand, within Rru_A0551at 651.794 kb on - strand, within Rru_A0551at 651.794 kb on - strand, within Rru_A0551at 651.794 kb on - strand, within Rru_A0551at 651.795 kb on + strand, within Rru_A0551at 651.796 kb on - strand, within Rru_A0551at 651.796 kb on - strand, within Rru_A0551at 652.055 kb on - strand, within Rru_A0551at 652.355 kb on - strand, within Rru_A0551at 652.692 kb on + strand, within Rru_A0551at 652.693 kb on - strand, within Rru_A0551at 652.693 kb on - strand, within Rru_A0551at 652.693 kb on - strand, within Rru_A0551at 652.693 kb on - strand, within Rru_A0551at 652.693 kb on - strand, within Rru_A0551at 652.694 kb on - strand, within Rru_A0551at 652.761 kb on - strand, within Rru_A0551at 652.761 kb on - strand, within Rru_A0551at 652.821 kb on + strandat 652.821 kb on + strandat 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.248 kb on - strand, within Rru_A0552at 653.248 kb on - strand, within Rru_A0552at 653.485 kb on + strandat 653.485 kb on + strandat 653.485 kb on + strandat 653.486 kb on - strandat 653.486 kb on - strandat 653.537 kb on + strandat 653.537 kb on + strandat 653.568 kb on + strandat 653.568 kb on + strandat 653.569 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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650,342 + Rru_A0550 0.53 +1.0
650,375 - Rru_A0550 0.54 +0.9
650,450 + Rru_A0550 0.59 +0.0
650,544 + Rru_A0550 0.64 -0.2
650,545 - Rru_A0550 0.64 +0.8
650,545 - Rru_A0550 0.64 +0.9
650,546 + Rru_A0550 0.64 +0.8
650,546 + Rru_A0550 0.64 +0.0
650,546 + Rru_A0550 0.64 +0.8
650,546 + Rru_A0550 0.64 +0.0
650,546 + Rru_A0550 0.64 +0.0
650,547 - Rru_A0550 0.64 -0.7
651,749 - Rru_A0551 0.27 +0.0
651,749 - Rru_A0551 0.27 +0.0
651,749 - Rru_A0551 0.27 +0.0
651,793 + Rru_A0551 0.29 +0.0
651,793 + Rru_A0551 0.29 +0.0
651,793 + Rru_A0551 0.29 +0.0
651,793 + Rru_A0551 0.29 -1.0
651,794 - Rru_A0551 0.29 +0.8
651,794 - Rru_A0551 0.29 +0.6
651,794 - Rru_A0551 0.29 +0.0
651,795 + Rru_A0551 0.29 +0.0
651,796 - Rru_A0551 0.30 +2.3
651,796 - Rru_A0551 0.30 +0.5
652,055 - Rru_A0551 0.45 +0.8
652,355 - Rru_A0551 0.64 +0.8
652,692 + Rru_A0551 0.85 +3.4
652,693 - Rru_A0551 0.85 +1.0
652,693 - Rru_A0551 0.85 +2.0
652,693 - Rru_A0551 0.85 -0.2
652,693 - Rru_A0551 0.85 +0.3
652,693 - Rru_A0551 0.85 +1.2
652,694 - Rru_A0551 0.85 +2.6
652,761 - Rru_A0551 0.89 -1.0
652,761 - Rru_A0551 0.89 +0.0
652,821 + +0.5
652,821 + +0.8
653,246 - Rru_A0552 0.68 +0.0
653,246 - Rru_A0552 0.68 +0.8
653,246 - Rru_A0552 0.68 +1.6
653,246 - Rru_A0552 0.68 +0.0
653,246 - Rru_A0552 0.68 +0.2
653,246 - Rru_A0552 0.68 +1.3
653,246 - Rru_A0552 0.68 +2.0
653,247 + Rru_A0552 0.68 +0.4
653,247 + Rru_A0552 0.68 +1.4
653,247 + Rru_A0552 0.68 +1.0
653,247 + Rru_A0552 0.68 +2.2
653,247 + Rru_A0552 0.68 +0.0
653,247 + Rru_A0552 0.68 +1.2
653,247 + Rru_A0552 0.68 +1.6
653,247 + Rru_A0552 0.68 -1.6
653,247 + Rru_A0552 0.68 +1.2
653,248 - Rru_A0552 0.68 +1.5
653,248 - Rru_A0552 0.68 +1.0
653,485 + +0.6
653,485 + +1.5
653,485 + +2.3
653,486 - +1.1
653,486 - +1.2
653,537 + +0.0
653,537 + +0.6
653,568 + +1.2
653,568 + +0.0
653,569 - +2.0

Or see this region's nucleotide sequence