Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0549 and Rru_A0550 are separated by 142 nucleotides Rru_A0550 and Rru_A0551 are separated by 126 nucleotides
Rru_A0549: Rru_A0549 - hypothetical protein (NCBI), at 648,132 to 649,259
_A0549
Rru_A0550: Rru_A0550 - TPR repeat (NCBI), at 649,402 to 651,189
_A0550
Rru_A0551: Rru_A0551 - TPR domain protein (NCBI), at 651,316 to 652,941
_A0551
Position (kb)
649
650
651
652 Strain fitness (log2 ratio)
-1
0
1
2
3 at 648.686 kb on + strand, within Rru_A0549 at 648.686 kb on + strand, within Rru_A0549 at 648.686 kb on + strand, within Rru_A0549 at 648.686 kb on + strand, within Rru_A0549 at 648.687 kb on - strand, within Rru_A0549 at 648.687 kb on - strand, within Rru_A0549 at 648.687 kb on - strand, within Rru_A0549 at 648.687 kb on - strand, within Rru_A0549 at 648.688 kb on + strand, within Rru_A0549 at 648.688 kb on + strand, within Rru_A0549 at 648.688 kb on + strand, within Rru_A0549 at 648.689 kb on - strand, within Rru_A0549 at 648.689 kb on - strand, within Rru_A0549 at 648.689 kb on - strand, within Rru_A0549 at 648.689 kb on - strand, within Rru_A0549 at 648.697 kb on + strand, within Rru_A0549 at 648.698 kb on - strand, within Rru_A0549 at 648.778 kb on + strand, within Rru_A0549 at 648.778 kb on + strand, within Rru_A0549 at 648.823 kb on + strand, within Rru_A0549 at 648.824 kb on - strand, within Rru_A0549 at 648.878 kb on + strand, within Rru_A0549 at 648.878 kb on + strand, within Rru_A0549 at 648.878 kb on + strand, within Rru_A0549 at 648.878 kb on + strand, within Rru_A0549 at 648.878 kb on + strand, within Rru_A0549 at 648.879 kb on - strand, within Rru_A0549 at 648.879 kb on - strand, within Rru_A0549 at 648.879 kb on - strand, within Rru_A0549 at 648.879 kb on - strand, within Rru_A0549 at 648.879 kb on - strand, within Rru_A0549 at 648.879 kb on - strand, within Rru_A0549 at 648.880 kb on + strand, within Rru_A0549 at 648.880 kb on + strand, within Rru_A0549 at 648.880 kb on + strand, within Rru_A0549 at 648.880 kb on + strand, within Rru_A0549 at 648.960 kb on - strand, within Rru_A0549 at 648.960 kb on - strand, within Rru_A0549 at 648.960 kb on - strand, within Rru_A0549 at 648.961 kb on + strand, within Rru_A0549 at 648.961 kb on + strand, within Rru_A0549 at 648.961 kb on + strand, within Rru_A0549 at 648.962 kb on - strand, within Rru_A0549 at 649.043 kb on + strand, within Rru_A0549 at 649.043 kb on + strand, within Rru_A0549 at 649.043 kb on + strand, within Rru_A0549 at 649.044 kb on - strand, within Rru_A0549 at 649.213 kb on + strand at 649.213 kb on + strand at 649.213 kb on + strand at 649.214 kb on - strand at 649.214 kb on - strand at 649.227 kb on + strand at 649.227 kb on + strand at 649.228 kb on - strand at 649.228 kb on - strand at 649.315 kb on - strand at 649.372 kb on - strand at 649.373 kb on + strand at 649.374 kb on - strand at 649.544 kb on + strand at 649.544 kb on + strand at 649.544 kb on + strand at 649.544 kb on + strand at 649.544 kb on + strand at 649.544 kb on + strand at 649.544 kb on + strand at 649.545 kb on - strand at 649.545 kb on - strand at 649.545 kb on - strand at 649.545 kb on - strand at 649.545 kb on - strand at 649.720 kb on + strand, within Rru_A0550 at 649.720 kb on + strand, within Rru_A0550 at 649.721 kb on - strand, within Rru_A0550 at 649.721 kb on - strand, within Rru_A0550 at 649.933 kb on + strand, within Rru_A0550 at 650.342 kb on + strand, within Rru_A0550 at 650.375 kb on - strand, within Rru_A0550 at 650.450 kb on + strand, within Rru_A0550 at 650.544 kb on + strand, within Rru_A0550 at 650.545 kb on - strand, within Rru_A0550 at 650.545 kb on - strand, within Rru_A0550 at 650.546 kb on + strand, within Rru_A0550 at 650.546 kb on + strand, within Rru_A0550 at 650.546 kb on + strand, within Rru_A0550 at 650.546 kb on + strand, within Rru_A0550 at 650.546 kb on + strand, within Rru_A0550 at 650.547 kb on - strand, within Rru_A0550 at 651.749 kb on - strand, within Rru_A0551 at 651.749 kb on - strand, within Rru_A0551 at 651.749 kb on - strand, within Rru_A0551 at 651.793 kb on + strand, within Rru_A0551 at 651.793 kb on + strand, within Rru_A0551 at 651.793 kb on + strand, within Rru_A0551 at 651.793 kb on + strand, within Rru_A0551 at 651.794 kb on - strand, within Rru_A0551 at 651.794 kb on - strand, within Rru_A0551 at 651.794 kb on - strand, within Rru_A0551 at 651.795 kb on + strand, within Rru_A0551 at 651.796 kb on - strand, within Rru_A0551 at 651.796 kb on - strand, within Rru_A0551 at 652.055 kb on - strand, within Rru_A0551
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 648,686 + Rru_A0549 0.49 +0.3 648,686 + Rru_A0549 0.49 +0.0 648,686 + Rru_A0549 0.49 +1.5 648,686 + Rru_A0549 0.49 +0.0 648,687 - Rru_A0549 0.49 +0.6 648,687 - Rru_A0549 0.49 +0.7 648,687 - Rru_A0549 0.49 +1.1 648,687 - Rru_A0549 0.49 +0.0 648,688 + Rru_A0549 0.49 +3.0 648,688 + Rru_A0549 0.49 +0.5 648,688 + Rru_A0549 0.49 +0.5 648,689 - Rru_A0549 0.49 +0.7 648,689 - Rru_A0549 0.49 +0.0 648,689 - Rru_A0549 0.49 +3.2 648,689 - Rru_A0549 0.49 +0.0 648,697 + Rru_A0549 0.50 +0.0 648,698 - Rru_A0549 0.50 +0.0 648,778 + Rru_A0549 0.57 +1.1 648,778 + Rru_A0549 0.57 +1.1 648,823 + Rru_A0549 0.61 +0.0 648,824 - Rru_A0549 0.61 +2.0 648,878 + Rru_A0549 0.66 +0.0 648,878 + Rru_A0549 0.66 +0.0 648,878 + Rru_A0549 0.66 +0.4 648,878 + Rru_A0549 0.66 +2.0 648,878 + Rru_A0549 0.66 +2.8 648,879 - Rru_A0549 0.66 +2.5 648,879 - Rru_A0549 0.66 +1.6 648,879 - Rru_A0549 0.66 +1.4 648,879 - Rru_A0549 0.66 +1.6 648,879 - Rru_A0549 0.66 +1.1 648,879 - Rru_A0549 0.66 +1.1 648,880 + Rru_A0549 0.66 +0.0 648,880 + Rru_A0549 0.66 +1.0 648,880 + Rru_A0549 0.66 +1.2 648,880 + Rru_A0549 0.66 +0.8 648,960 - Rru_A0549 0.73 +1.0 648,960 - Rru_A0549 0.73 +0.0 648,960 - Rru_A0549 0.73 -0.6 648,961 + Rru_A0549 0.73 +0.0 648,961 + Rru_A0549 0.73 +0.0 648,961 + Rru_A0549 0.73 +1.1 648,962 - Rru_A0549 0.74 +0.9 649,043 + Rru_A0549 0.81 +0.6 649,043 + Rru_A0549 0.81 +1.0 649,043 + Rru_A0549 0.81 +0.0 649,044 - Rru_A0549 0.81 -1.0 649,213 + +0.2 649,213 + +1.1 649,213 + +0.0 649,214 - -1.0 649,214 - +1.3 649,227 + +0.3 649,227 + +1.5 649,228 - +0.0 649,228 - +0.0 649,315 - +0.0 649,372 - +2.5 649,373 + +1.8 649,374 - +0.8 649,544 + +0.0 649,544 + +1.8 649,544 + +1.2 649,544 + +0.0 649,544 + +0.6 649,544 + +0.6 649,544 + +1.4 649,545 - +0.6 649,545 - +0.0 649,545 - +1.4 649,545 - +1.0 649,545 - +1.3 649,720 + Rru_A0550 0.18 +1.2 649,720 + Rru_A0550 0.18 +0.8 649,721 - Rru_A0550 0.18 +0.9 649,721 - Rru_A0550 0.18 +0.9 649,933 + Rru_A0550 0.30 +1.2 650,342 + Rru_A0550 0.53 +1.0 650,375 - Rru_A0550 0.54 +0.9 650,450 + Rru_A0550 0.59 +0.0 650,544 + Rru_A0550 0.64 -0.2 650,545 - Rru_A0550 0.64 +0.8 650,545 - Rru_A0550 0.64 +0.9 650,546 + Rru_A0550 0.64 +0.8 650,546 + Rru_A0550 0.64 +0.0 650,546 + Rru_A0550 0.64 +0.8 650,546 + Rru_A0550 0.64 +0.0 650,546 + Rru_A0550 0.64 +0.0 650,547 - Rru_A0550 0.64 -0.7 651,749 - Rru_A0551 0.27 +0.0 651,749 - Rru_A0551 0.27 +0.0 651,749 - Rru_A0551 0.27 +0.0 651,793 + Rru_A0551 0.29 +0.0 651,793 + Rru_A0551 0.29 +0.0 651,793 + Rru_A0551 0.29 +0.0 651,793 + Rru_A0551 0.29 -1.0 651,794 - Rru_A0551 0.29 +0.8 651,794 - Rru_A0551 0.29 +0.6 651,794 - Rru_A0551 0.29 +0.0 651,795 + Rru_A0551 0.29 +0.0 651,796 - Rru_A0551 0.30 +2.3 651,796 - Rru_A0551 0.30 +0.5 652,055 - Rru_A0551 0.45 +0.8
Or see this region's nucleotide sequence