Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0537

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0536 and Rru_A0537 are separated by 130 nucleotidesRru_A0537 and Rru_A0538 are separated by 4 nucleotidesRru_A0538 and Rru_A0539 are separated by 156 nucleotides Rru_A0536: Rru_A0536 - Transcriptional Regulator, AraC family (NCBI), at 631,118 to 632,032 _A0536 Rru_A0537: Rru_A0537 - Protein of unknown function DUF955 (NCBI), at 632,163 to 633,422 _A0537 Rru_A0538: Rru_A0538 - hypothetical protein (NCBI), at 633,427 to 633,912 _A0538 Rru_A0539: Rru_A0539 - Flagellar biosynthesis protein FlhA (NCBI), at 634,069 to 636,231 _A0539 Position (kb) 632 633 634Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 631.219 kb on - strand, within Rru_A0536at 631.270 kb on + strand, within Rru_A0536at 631.271 kb on - strand, within Rru_A0536at 631.271 kb on - strand, within Rru_A0536at 631.283 kb on + strand, within Rru_A0536at 631.283 kb on + strand, within Rru_A0536at 631.283 kb on + strand, within Rru_A0536at 631.284 kb on - strand, within Rru_A0536at 631.284 kb on - strand, within Rru_A0536at 631.284 kb on - strand, within Rru_A0536at 631.284 kb on - strand, within Rru_A0536at 631.430 kb on + strand, within Rru_A0536at 631.430 kb on + strand, within Rru_A0536at 631.430 kb on + strand, within Rru_A0536at 631.431 kb on - strand, within Rru_A0536at 631.432 kb on + strand, within Rru_A0536at 631.628 kb on + strand, within Rru_A0536at 631.628 kb on + strand, within Rru_A0536at 631.628 kb on + strand, within Rru_A0536at 631.629 kb on - strand, within Rru_A0536at 631.629 kb on - strand, within Rru_A0536at 631.630 kb on + strand, within Rru_A0536at 631.630 kb on + strand, within Rru_A0536at 631.631 kb on - strand, within Rru_A0536at 631.631 kb on - strand, within Rru_A0536at 631.838 kb on + strand, within Rru_A0536at 631.838 kb on + strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 632.116 kb on - strandat 632.130 kb on - strandat 632.383 kb on - strand, within Rru_A0537at 632.383 kb on - strand, within Rru_A0537at 632.626 kb on - strand, within Rru_A0537at 632.626 kb on - strand, within Rru_A0537at 632.856 kb on - strand, within Rru_A0537at 632.856 kb on - strand, within Rru_A0537at 633.111 kb on - strand, within Rru_A0537at 633.235 kb on - strand, within Rru_A0537at 633.475 kb on + strandat 633.476 kb on - strand, within Rru_A0538at 633.688 kb on + strand, within Rru_A0538at 633.689 kb on - strand, within Rru_A0538at 633.708 kb on + strand, within Rru_A0538at 633.709 kb on - strand, within Rru_A0538at 633.865 kb on - strandat 633.968 kb on + strandat 633.969 kb on - strandat 634.013 kb on - strandat 634.169 kb on + strandat 634.169 kb on + strandat 634.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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631,219 - Rru_A0536 0.11 +0.7
631,270 + Rru_A0536 0.17 +1.0
631,271 - Rru_A0536 0.17 +0.0
631,271 - Rru_A0536 0.17 +0.0
631,283 + Rru_A0536 0.18 +0.0
631,283 + Rru_A0536 0.18 +0.0
631,283 + Rru_A0536 0.18 +0.0
631,284 - Rru_A0536 0.18 +0.9
631,284 - Rru_A0536 0.18 +1.6
631,284 - Rru_A0536 0.18 +0.0
631,284 - Rru_A0536 0.18 +0.0
631,430 + Rru_A0536 0.34 +1.4
631,430 + Rru_A0536 0.34 -0.6
631,430 + Rru_A0536 0.34 -1.0
631,431 - Rru_A0536 0.34 +1.8
631,432 + Rru_A0536 0.34 +0.0
631,628 + Rru_A0536 0.56 +1.9
631,628 + Rru_A0536 0.56 -0.3
631,628 + Rru_A0536 0.56 +1.0
631,629 - Rru_A0536 0.56 +0.0
631,629 - Rru_A0536 0.56 +0.0
631,630 + Rru_A0536 0.56 +0.9
631,630 + Rru_A0536 0.56 +0.0
631,631 - Rru_A0536 0.56 +1.8
631,631 - Rru_A0536 0.56 +2.3
631,838 + Rru_A0536 0.79 +3.7
631,838 + Rru_A0536 0.79 +1.1
631,839 - Rru_A0536 0.79 +3.8
631,839 - Rru_A0536 0.79 +0.0
631,839 - Rru_A0536 0.79 +0.7
631,839 - Rru_A0536 0.79 +1.1
631,839 - Rru_A0536 0.79 +0.0
631,839 - Rru_A0536 0.79 +0.0
631,839 - Rru_A0536 0.79 +0.8
631,839 - Rru_A0536 0.79 +0.0
632,116 - +0.0
632,130 - +2.5
632,383 - Rru_A0537 0.17 +0.0
632,383 - Rru_A0537 0.17 +0.0
632,626 - Rru_A0537 0.37 +0.0
632,626 - Rru_A0537 0.37 +0.0
632,856 - Rru_A0537 0.55 -1.0
632,856 - Rru_A0537 0.55 +0.4
633,111 - Rru_A0537 0.75 +0.0
633,235 - Rru_A0537 0.85 -2.3
633,475 + +1.2
633,476 - Rru_A0538 0.10 +0.0
633,688 + Rru_A0538 0.54 +2.2
633,689 - Rru_A0538 0.54 +2.1
633,708 + Rru_A0538 0.58 +1.0
633,709 - Rru_A0538 0.58 +1.5
633,865 - +1.3
633,968 + +2.0
633,969 - +0.6
634,013 - +1.2
634,169 + +1.3
634,169 + +1.0
634,170 - +2.3

Or see this region's nucleotide sequence