Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0531 and Rru_A0532 are separated by 92 nucleotides Rru_A0532 and Rru_A0533 are separated by 47 nucleotides
Rru_A0531: Rru_A0531 - hypothetical protein (NCBI), at 625,425 to 627,191
_A0531
Rru_A0532: Rru_A0532 - Cobyrinic acid a,c-diamide synthase (NCBI), at 627,284 to 628,057
_A0532
Rru_A0533: Rru_A0533 - GTP-binding signal recognition particle SRP54, G-domain (NCBI), at 628,105 to 629,211
_A0533
Position (kb) 627
628
629 Strain fitness (log2 ratio) -1
0
1
2
3 at 627.285 kb on + strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.469 kb on - strand, within Rru_A0532 at 627.469 kb on - strand, within Rru_A0532 at 627.564 kb on + strand, within Rru_A0532 at 627.564 kb on + strand, within Rru_A0532 at 627.564 kb on + strand, within Rru_A0532 at 627.565 kb on - strand, within Rru_A0532 at 627.565 kb on - strand, within Rru_A0532 at 627.565 kb on - strand, within Rru_A0532 at 627.647 kb on - strand, within Rru_A0532 at 627.684 kb on + strand, within Rru_A0532 at 627.684 kb on + strand, within Rru_A0532 at 628.015 kb on + strand at 628.015 kb on + strand at 628.015 kb on + strand at 628.016 kb on - strand at 628.016 kb on - strand at 628.121 kb on + strand at 628.128 kb on + strand at 628.129 kb on - strand at 628.455 kb on + strand, within Rru_A0533 at 628.455 kb on + strand, within Rru_A0533 at 628.455 kb on + strand, within Rru_A0533 at 628.455 kb on + strand, within Rru_A0533 at 628.455 kb on + strand, within Rru_A0533 at 628.456 kb on - strand, within Rru_A0533 at 628.456 kb on - strand, within Rru_A0533 at 628.456 kb on - strand, within Rru_A0533 at 628.469 kb on + strand, within Rru_A0533 at 628.469 kb on + strand, within Rru_A0533 at 628.470 kb on - strand, within Rru_A0533 at 628.470 kb on - strand, within Rru_A0533 at 628.470 kb on - strand, within Rru_A0533 at 628.542 kb on + strand, within Rru_A0533 at 628.542 kb on + strand, within Rru_A0533 at 628.542 kb on + strand, within Rru_A0533 at 628.543 kb on - strand, within Rru_A0533 at 628.587 kb on + strand, within Rru_A0533 at 628.588 kb on - strand, within Rru_A0533 at 628.828 kb on + strand, within Rru_A0533 at 628.829 kb on - strand, within Rru_A0533 at 628.829 kb on - strand, within Rru_A0533
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 627,285 + +1.0 627,286 - +3.0 627,286 - +2.6 627,286 - +0.0 627,286 - +1.6 627,469 - Rru_A0532 0.24 +0.0 627,469 - Rru_A0532 0.24 +0.0 627,564 + Rru_A0532 0.36 +2.2 627,564 + Rru_A0532 0.36 +0.0 627,564 + Rru_A0532 0.36 +0.0 627,565 - Rru_A0532 0.36 +0.0 627,565 - Rru_A0532 0.36 +1.0 627,565 - Rru_A0532 0.36 -1.0 627,647 - Rru_A0532 0.47 +0.7 627,684 + Rru_A0532 0.52 +1.5 627,684 + Rru_A0532 0.52 +1.3 628,015 + +2.8 628,015 + +0.5 628,015 + +1.6 628,016 - +0.0 628,016 - -1.0 628,121 + +1.0 628,128 + +1.2 628,129 - +1.0 628,455 + Rru_A0533 0.32 +1.5 628,455 + Rru_A0533 0.32 +0.0 628,455 + Rru_A0533 0.32 +1.2 628,455 + Rru_A0533 0.32 +0.0 628,455 + Rru_A0533 0.32 +1.1 628,456 - Rru_A0533 0.32 -1.0 628,456 - Rru_A0533 0.32 +0.0 628,456 - Rru_A0533 0.32 +0.0 628,469 + Rru_A0533 0.33 +2.0 628,469 + Rru_A0533 0.33 +1.4 628,470 - Rru_A0533 0.33 +0.0 628,470 - Rru_A0533 0.33 +1.5 628,470 - Rru_A0533 0.33 +0.4 628,542 + Rru_A0533 0.39 +1.4 628,542 + Rru_A0533 0.39 +1.3 628,542 + Rru_A0533 0.39 +0.0 628,543 - Rru_A0533 0.40 +1.1 628,587 + Rru_A0533 0.44 +1.4 628,588 - Rru_A0533 0.44 +1.6 628,828 + Rru_A0533 0.65 +0.3 628,829 - Rru_A0533 0.65 +0.0 628,829 - Rru_A0533 0.65 +0.0
Or see this region's nucleotide sequence