Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0523

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0521 and Rru_A0522 are separated by 179 nucleotidesRru_A0522 and Rru_A0523 are separated by 31 nucleotidesRru_A0523 and Rru_A0524 are separated by 4 nucleotidesRru_A0524 and Rru_A0525 are separated by 33 nucleotides Rru_A0521: Rru_A0521 - CheA Signal Transduction Histidine Kinases (STHK) (NCBI), at 614,264 to 617,092 _A0521 Rru_A0522: Rru_A0522 - Response regulator receiver domain protein (CheY) (NCBI), at 617,272 to 617,643 _A0522 Rru_A0523: Rru_A0523 - Two component CheB methylesterase (NCBI), at 617,675 to 618,838 _A0523 Rru_A0524: Rru_A0524 - MCP methyltransferase, CheR-type (NCBI), at 618,843 to 619,685 _A0524 Rru_A0525: Rru_A0525 - Two component Transcriptional regulator, Winged helix family (NCBI), at 619,719 to 620,438 _A0525 Position (kb) 617 618 619Strain fitness (log2 ratio) -2 -1 0 1 2 3at 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.210 kb on + strandat 617.210 kb on + strandat 617.211 kb on - strandat 617.267 kb on + strandat 617.267 kb on + strandat 617.268 kb on - strandat 617.268 kb on - strandat 617.434 kb on - strand, within Rru_A0522at 617.434 kb on - strand, within Rru_A0522at 617.529 kb on + strand, within Rru_A0522at 617.573 kb on - strand, within Rru_A0522at 617.573 kb on - strand, within Rru_A0522at 617.574 kb on + strand, within Rru_A0522at 617.574 kb on + strand, within Rru_A0522at 617.575 kb on - strand, within Rru_A0522at 617.575 kb on - strand, within Rru_A0522at 617.577 kb on + strand, within Rru_A0522at 617.577 kb on + strand, within Rru_A0522at 617.577 kb on + strand, within Rru_A0522at 617.578 kb on - strand, within Rru_A0522at 617.707 kb on + strandat 617.707 kb on + strandat 617.925 kb on + strand, within Rru_A0523at 617.925 kb on + strand, within Rru_A0523at 617.926 kb on - strand, within Rru_A0523at 617.926 kb on - strand, within Rru_A0523at 617.926 kb on - strand, within Rru_A0523at 618.373 kb on + strand, within Rru_A0523at 618.373 kb on + strand, within Rru_A0523at 618.373 kb on + strand, within Rru_A0523at 618.373 kb on + strand, within Rru_A0523at 618.374 kb on - strand, within Rru_A0523at 618.374 kb on - strand, within Rru_A0523at 618.374 kb on - strand, within Rru_A0523at 618.409 kb on + strand, within Rru_A0523at 618.410 kb on - strand, within Rru_A0523at 618.410 kb on - strand, within Rru_A0523at 618.475 kb on + strand, within Rru_A0523at 618.476 kb on - strand, within Rru_A0523at 618.476 kb on - strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.498 kb on - strand, within Rru_A0523at 618.498 kb on - strand, within Rru_A0523at 618.614 kb on + strand, within Rru_A0523at 618.614 kb on + strand, within Rru_A0523at 618.809 kb on + strandat 618.809 kb on + strandat 618.810 kb on - strandat 618.810 kb on - strandat 618.888 kb on - strandat 618.888 kb on - strandat 618.921 kb on + strandat 618.921 kb on + strandat 618.922 kb on - strandat 618.922 kb on - strandat 619.115 kb on + strand, within Rru_A0524at 619.188 kb on + strand, within Rru_A0524at 619.189 kb on - strand, within Rru_A0524at 619.189 kb on - strand, within Rru_A0524at 619.302 kb on + strand, within Rru_A0524at 619.414 kb on - strand, within Rru_A0524at 619.414 kb on - strand, within Rru_A0524at 619.414 kb on - strand, within Rru_A0524at 619.414 kb on - strand, within Rru_A0524at 619.563 kb on + strand, within Rru_A0524at 619.563 kb on + strand, within Rru_A0524at 619.564 kb on - strand, within Rru_A0524at 619.635 kb on + strandat 619.784 kb on - strandat 619.784 kb on - strandat 619.784 kb on - strandat 619.811 kb on - strand, within Rru_A0525at 619.811 kb on - strand, within Rru_A0525at 619.811 kb on - strand, within Rru_A0525

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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617,003 + +0.0
617,003 + +1.6
617,003 + +1.6
617,003 + +3.2
617,003 + +0.0
617,003 + +0.7
617,003 + +0.9
617,003 + -0.2
617,004 - +2.0
617,004 - +0.0
617,004 - +0.8
617,004 - -1.0
617,004 - -1.0
617,004 - -0.6
617,210 + +1.5
617,210 + +1.3
617,211 - +2.7
617,267 + +0.0
617,267 + +1.3
617,268 - +0.0
617,268 - +0.0
617,434 - Rru_A0522 0.44 +1.6
617,434 - Rru_A0522 0.44 +0.0
617,529 + Rru_A0522 0.69 +0.0
617,573 - Rru_A0522 0.81 +0.6
617,573 - Rru_A0522 0.81 +0.0
617,574 + Rru_A0522 0.81 +2.0
617,574 + Rru_A0522 0.81 +0.0
617,575 - Rru_A0522 0.81 +0.0
617,575 - Rru_A0522 0.81 +1.6
617,577 + Rru_A0522 0.82 +1.0
617,577 + Rru_A0522 0.82 +0.8
617,577 + Rru_A0522 0.82 +0.0
617,578 - Rru_A0522 0.82 +0.0
617,707 + -0.4
617,707 + +0.0
617,925 + Rru_A0523 0.21 -1.0
617,925 + Rru_A0523 0.21 +0.0
617,926 - Rru_A0523 0.22 +2.0
617,926 - Rru_A0523 0.22 +1.5
617,926 - Rru_A0523 0.22 +0.0
618,373 + Rru_A0523 0.60 +0.8
618,373 + Rru_A0523 0.60 +1.1
618,373 + Rru_A0523 0.60 +0.8
618,373 + Rru_A0523 0.60 +1.0
618,374 - Rru_A0523 0.60 +1.2
618,374 - Rru_A0523 0.60 +1.6
618,374 - Rru_A0523 0.60 +0.4
618,409 + Rru_A0523 0.63 +0.5
618,410 - Rru_A0523 0.63 +0.0
618,410 - Rru_A0523 0.63 +1.2
618,475 + Rru_A0523 0.69 +0.0
618,476 - Rru_A0523 0.69 +0.0
618,476 - Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 +0.9
618,479 + Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 +0.4
618,479 + Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 +1.3
618,480 - Rru_A0523 0.69 +0.6
618,480 - Rru_A0523 0.69 +1.0
618,480 - Rru_A0523 0.69 +0.0
618,480 - Rru_A0523 0.69 +1.0
618,480 - Rru_A0523 0.69 +0.6
618,480 - Rru_A0523 0.69 +0.9
618,498 - Rru_A0523 0.71 +1.7
618,498 - Rru_A0523 0.71 +1.0
618,614 + Rru_A0523 0.81 +0.3
618,614 + Rru_A0523 0.81 -1.0
618,809 + +0.0
618,809 + +0.3
618,810 - +1.2
618,810 - +2.2
618,888 - +1.2
618,888 - +0.0
618,921 + +0.4
618,921 + +2.0
618,922 - +0.2
618,922 - +1.9
619,115 + Rru_A0524 0.32 +0.4
619,188 + Rru_A0524 0.41 +0.0
619,189 - Rru_A0524 0.41 +0.0
619,189 - Rru_A0524 0.41 +1.4
619,302 + Rru_A0524 0.54 +1.8
619,414 - Rru_A0524 0.68 +1.1
619,414 - Rru_A0524 0.68 +1.6
619,414 - Rru_A0524 0.68 +1.2
619,414 - Rru_A0524 0.68 +0.0
619,563 + Rru_A0524 0.85 +1.5
619,563 + Rru_A0524 0.85 +1.6
619,564 - Rru_A0524 0.86 +0.4
619,635 + +1.0
619,784 - +0.0
619,784 - -2.3
619,784 - +0.0
619,811 - Rru_A0525 0.13 +0.0
619,811 - Rru_A0525 0.13 -0.4
619,811 - Rru_A0525 0.13 +0.0

Or see this region's nucleotide sequence