Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0497

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0494 and Rru_A0495 are separated by 6 nucleotidesRru_A0495 and Rru_A0496 are separated by 127 nucleotidesRru_A0496 and Rru_A0497 are separated by 45 nucleotidesRru_A0497 and Rru_A0498 are separated by 61 nucleotidesRru_A0498 and Rru_A0499 overlap by 4 nucleotides Rru_A0494: Rru_A0494 - Squalene/phytoene synthase (NCBI), at 580,336 to 581,364 _A0494 Rru_A0495: Rru_A0495 - hypothetical protein (NCBI), at 581,371 to 581,706 _A0495 Rru_A0496: Rru_A0496 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 581,834 to 582,223 _A0496 Rru_A0497: Rru_A0497 - ABC transporter component (NCBI), at 582,269 to 583,369 _A0497 Rru_A0498: Rru_A0498 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 583,431 to 584,213 _A0498 Rru_A0499: Rru_A0499 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 584,210 to 585,082 _A0499 Position (kb) 582 583 584Strain fitness (log2 ratio) -1 0 1 2 3at 581.412 kb on + strand, within Rru_A0495at 581.466 kb on - strand, within Rru_A0495at 581.527 kb on - strand, within Rru_A0495at 581.587 kb on + strand, within Rru_A0495at 581.588 kb on - strand, within Rru_A0495at 581.588 kb on - strand, within Rru_A0495at 581.590 kb on - strand, within Rru_A0495at 581.704 kb on + strandat 581.704 kb on + strandat 581.757 kb on + strandat 581.762 kb on + strandat 581.762 kb on + strandat 581.763 kb on - strandat 581.934 kb on - strand, within Rru_A0496at 581.934 kb on - strand, within Rru_A0496at 581.934 kb on - strand, within Rru_A0496at 582.222 kb on - strandat 582.222 kb on - strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.271 kb on - strandat 582.271 kb on - strandat 582.271 kb on - strandat 582.271 kb on - strandat 582.291 kb on - strandat 582.372 kb on + strandat 582.372 kb on + strandat 582.372 kb on + strandat 582.373 kb on - strandat 582.373 kb on - strandat 582.373 kb on - strandat 582.373 kb on - strandat 582.666 kb on + strand, within Rru_A0497at 582.666 kb on + strand, within Rru_A0497at 582.667 kb on - strand, within Rru_A0497at 582.667 kb on - strand, within Rru_A0497at 582.667 kb on - strand, within Rru_A0497at 582.667 kb on - strand, within Rru_A0497at 582.936 kb on + strand, within Rru_A0497at 582.936 kb on + strand, within Rru_A0497at 582.943 kb on - strand, within Rru_A0497at 583.080 kb on + strand, within Rru_A0497at 583.149 kb on - strand, within Rru_A0497at 583.323 kb on + strandat 583.323 kb on + strandat 583.324 kb on - strandat 583.324 kb on - strandat 583.324 kb on - strandat 583.324 kb on - strandat 583.351 kb on + strandat 583.410 kb on - strandat 583.556 kb on + strand, within Rru_A0498at 583.568 kb on - strand, within Rru_A0498at 583.568 kb on - strand, within Rru_A0498at 583.568 kb on - strand, within Rru_A0498at 583.668 kb on - strand, within Rru_A0498at 583.780 kb on + strand, within Rru_A0498at 583.780 kb on + strand, within Rru_A0498at 583.781 kb on - strand, within Rru_A0498at 583.781 kb on - strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.786 kb on + strand, within Rru_A0498at 583.786 kb on + strand, within Rru_A0498at 583.786 kb on + strand, within Rru_A0498at 583.786 kb on + strand, within Rru_A0498at 583.786 kb on + strand, within Rru_A0498at 583.787 kb on - strand, within Rru_A0498at 583.787 kb on - strand, within Rru_A0498at 583.787 kb on - strand, within Rru_A0498at 583.807 kb on + strand, within Rru_A0498at 583.807 kb on + strand, within Rru_A0498at 583.888 kb on + strand, within Rru_A0498at 583.984 kb on + strand, within Rru_A0498at 583.985 kb on - strand, within Rru_A0498at 584.085 kb on - strand, within Rru_A0498at 584.107 kb on + strand, within Rru_A0498at 584.107 kb on + strand, within Rru_A0498at 584.107 kb on + strand, within Rru_A0498at 584.167 kb on + strandat 584.167 kb on + strandat 584.168 kb on - strandat 584.254 kb on + strandat 584.254 kb on + strandat 584.255 kb on - strandat 584.255 kb on - strandat 584.256 kb on + strandat 584.256 kb on + strandat 584.256 kb on + strandat 584.256 kb on + strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.308 kb on - strand, within Rru_A0499at 584.352 kb on + strand, within Rru_A0499at 584.352 kb on + strand, within Rru_A0499at 584.352 kb on + strand, within Rru_A0499at 584.353 kb on - strand, within Rru_A0499at 584.353 kb on - strand, within Rru_A0499

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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581,412 + Rru_A0495 0.12 +0.7
581,466 - Rru_A0495 0.28 +2.4
581,527 - Rru_A0495 0.46 +0.0
581,587 + Rru_A0495 0.64 +0.0
581,588 - Rru_A0495 0.65 +0.7
581,588 - Rru_A0495 0.65 +0.0
581,590 - Rru_A0495 0.65 +0.0
581,704 + +1.2
581,704 + +0.4
581,757 + +0.0
581,762 + +2.4
581,762 + +0.0
581,763 - +3.3
581,934 - Rru_A0496 0.26 +1.6
581,934 - Rru_A0496 0.26 +0.0
581,934 - Rru_A0496 0.26 +0.0
582,222 - +2.0
582,222 - +0.7
582,270 + +0.0
582,270 + +1.8
582,270 + +0.3
582,270 + +1.1
582,270 + -1.0
582,271 - -0.4
582,271 - +0.0
582,271 - +3.5
582,271 - +0.0
582,291 - +0.0
582,372 + +1.0
582,372 + +0.0
582,372 + +1.9
582,373 - +0.0
582,373 - +1.1
582,373 - +0.8
582,373 - +1.7
582,666 + Rru_A0497 0.36 +0.3
582,666 + Rru_A0497 0.36 +1.3
582,667 - Rru_A0497 0.36 +0.3
582,667 - Rru_A0497 0.36 +0.4
582,667 - Rru_A0497 0.36 +1.3
582,667 - Rru_A0497 0.36 +0.0
582,936 + Rru_A0497 0.61 +1.0
582,936 + Rru_A0497 0.61 +0.3
582,943 - Rru_A0497 0.61 +0.0
583,080 + Rru_A0497 0.74 +1.4
583,149 - Rru_A0497 0.80 +0.0
583,323 + -1.0
583,323 + +1.3
583,324 - +0.9
583,324 - +3.2
583,324 - +1.5
583,324 - +2.2
583,351 + +1.8
583,410 - +1.6
583,556 + Rru_A0498 0.16 +0.0
583,568 - Rru_A0498 0.17 +0.7
583,568 - Rru_A0498 0.17 +1.8
583,568 - Rru_A0498 0.17 +2.4
583,668 - Rru_A0498 0.30 +0.4
583,780 + Rru_A0498 0.45 +0.0
583,780 + Rru_A0498 0.45 +0.0
583,781 - Rru_A0498 0.45 +0.4
583,781 - Rru_A0498 0.45 +1.0
583,784 + Rru_A0498 0.45 +0.0
583,784 + Rru_A0498 0.45 +0.9
583,784 + Rru_A0498 0.45 +0.0
583,784 + Rru_A0498 0.45 +0.6
583,784 + Rru_A0498 0.45 +0.8
583,784 + Rru_A0498 0.45 +1.1
583,784 + Rru_A0498 0.45 +0.0
583,785 - Rru_A0498 0.45 +0.0
583,785 - Rru_A0498 0.45 +0.0
583,785 - Rru_A0498 0.45 +2.2
583,785 - Rru_A0498 0.45 +0.0
583,785 - Rru_A0498 0.45 -1.0
583,785 - Rru_A0498 0.45 +0.9
583,785 - Rru_A0498 0.45 -0.2
583,785 - Rru_A0498 0.45 +0.6
583,785 - Rru_A0498 0.45 +1.5
583,785 - Rru_A0498 0.45 +1.1
583,785 - Rru_A0498 0.45 -1.6
583,785 - Rru_A0498 0.45 +0.0
583,786 + Rru_A0498 0.45 +0.8
583,786 + Rru_A0498 0.45 -0.1
583,786 + Rru_A0498 0.45 +0.0
583,786 + Rru_A0498 0.45 +0.0
583,786 + Rru_A0498 0.45 -1.0
583,787 - Rru_A0498 0.45 +0.3
583,787 - Rru_A0498 0.45 +1.0
583,787 - Rru_A0498 0.45 -0.3
583,807 + Rru_A0498 0.48 +0.8
583,807 + Rru_A0498 0.48 +0.0
583,888 + Rru_A0498 0.58 +2.3
583,984 + Rru_A0498 0.71 +0.0
583,985 - Rru_A0498 0.71 +0.0
584,085 - Rru_A0498 0.84 +0.0
584,107 + Rru_A0498 0.86 +0.6
584,107 + Rru_A0498 0.86 +0.8
584,107 + Rru_A0498 0.86 +1.2
584,167 + +1.6
584,167 + +0.0
584,168 - +1.3
584,254 + +1.6
584,254 + +1.5
584,255 - +2.4
584,255 - +2.4
584,256 + +0.0
584,256 + +2.6
584,256 + +3.6
584,256 + +1.2
584,257 - +0.0
584,257 - -0.4
584,257 - +1.3
584,257 - +0.0
584,257 - -1.0
584,257 - +0.2
584,257 - +0.0
584,308 - Rru_A0499 0.11 +1.0
584,352 + Rru_A0499 0.16 +0.6
584,352 + Rru_A0499 0.16 +0.0
584,352 + Rru_A0499 0.16 +0.7
584,353 - Rru_A0499 0.16 +1.5
584,353 - Rru_A0499 0.16 +1.0

Or see this region's nucleotide sequence