Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0494 and Rru_A0495 are separated by 6 nucleotides Rru_A0495 and Rru_A0496 are separated by 127 nucleotides Rru_A0496 and Rru_A0497 are separated by 45 nucleotides
Rru_A0494: Rru_A0494 - Squalene/phytoene synthase (NCBI), at 580,336 to 581,364
_A0494
Rru_A0495: Rru_A0495 - hypothetical protein (NCBI), at 581,371 to 581,706
_A0495
Rru_A0496: Rru_A0496 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 581,834 to 582,223
_A0496
Rru_A0497: Rru_A0497 - ABC transporter component (NCBI), at 582,269 to 583,369
_A0497
Position (kb) 581
582 Strain fitness (log2 ratio) -1
0
1
2
3 at 580.459 kb on + strand, within Rru_A0494 at 580.553 kb on - strand, within Rru_A0494 at 580.599 kb on + strand, within Rru_A0494 at 580.599 kb on + strand, within Rru_A0494 at 580.867 kb on + strand, within Rru_A0494 at 580.867 kb on + strand, within Rru_A0494 at 580.868 kb on - strand, within Rru_A0494 at 580.868 kb on - strand, within Rru_A0494 at 580.868 kb on - strand, within Rru_A0494 at 580.990 kb on + strand, within Rru_A0494 at 580.990 kb on + strand, within Rru_A0494 at 580.990 kb on + strand, within Rru_A0494 at 580.991 kb on - strand, within Rru_A0494 at 580.991 kb on - strand, within Rru_A0494 at 581.065 kb on + strand, within Rru_A0494 at 581.200 kb on + strand, within Rru_A0494 at 581.200 kb on + strand, within Rru_A0494 at 581.201 kb on - strand, within Rru_A0494 at 581.201 kb on - strand, within Rru_A0494 at 581.201 kb on - strand, within Rru_A0494 at 581.412 kb on + strand, within Rru_A0495 at 581.466 kb on - strand, within Rru_A0495 at 581.527 kb on - strand, within Rru_A0495 at 581.587 kb on + strand, within Rru_A0495 at 581.588 kb on - strand, within Rru_A0495 at 581.588 kb on - strand, within Rru_A0495 at 581.590 kb on - strand, within Rru_A0495 at 581.704 kb on + strand at 581.704 kb on + strand at 581.757 kb on + strand at 581.762 kb on + strand at 581.762 kb on + strand at 581.763 kb on - strand at 581.934 kb on - strand, within Rru_A0496 at 581.934 kb on - strand, within Rru_A0496 at 581.934 kb on - strand, within Rru_A0496 at 582.222 kb on - strand at 582.222 kb on - strand at 582.270 kb on + strand at 582.270 kb on + strand at 582.270 kb on + strand at 582.270 kb on + strand at 582.270 kb on + strand at 582.271 kb on - strand at 582.271 kb on - strand at 582.271 kb on - strand at 582.271 kb on - strand at 582.291 kb on - strand at 582.372 kb on + strand at 582.372 kb on + strand at 582.372 kb on + strand at 582.373 kb on - strand at 582.373 kb on - strand at 582.373 kb on - strand at 582.373 kb on - strand at 582.666 kb on + strand, within Rru_A0497 at 582.666 kb on + strand, within Rru_A0497 at 582.667 kb on - strand, within Rru_A0497 at 582.667 kb on - strand, within Rru_A0497 at 582.667 kb on - strand, within Rru_A0497 at 582.667 kb on - strand, within Rru_A0497
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 580,459 + Rru_A0494 0.12 +0.0 580,553 - Rru_A0494 0.21 +0.0 580,599 + Rru_A0494 0.26 +0.8 580,599 + Rru_A0494 0.26 +0.5 580,867 + Rru_A0494 0.52 +0.0 580,867 + Rru_A0494 0.52 -1.1 580,868 - Rru_A0494 0.52 +0.4 580,868 - Rru_A0494 0.52 -1.0 580,868 - Rru_A0494 0.52 +0.0 580,990 + Rru_A0494 0.64 +2.4 580,990 + Rru_A0494 0.64 +0.0 580,990 + Rru_A0494 0.64 +1.6 580,991 - Rru_A0494 0.64 +0.0 580,991 - Rru_A0494 0.64 -0.4 581,065 + Rru_A0494 0.71 +0.0 581,200 + Rru_A0494 0.84 -1.5 581,200 + Rru_A0494 0.84 +0.0 581,201 - Rru_A0494 0.84 +1.0 581,201 - Rru_A0494 0.84 +1.2 581,201 - Rru_A0494 0.84 +0.0 581,412 + Rru_A0495 0.12 +0.7 581,466 - Rru_A0495 0.28 +2.4 581,527 - Rru_A0495 0.46 +0.0 581,587 + Rru_A0495 0.64 +0.0 581,588 - Rru_A0495 0.65 +0.7 581,588 - Rru_A0495 0.65 +0.0 581,590 - Rru_A0495 0.65 +0.0 581,704 + +1.2 581,704 + +0.4 581,757 + +0.0 581,762 + +2.4 581,762 + +0.0 581,763 - +3.3 581,934 - Rru_A0496 0.26 +1.6 581,934 - Rru_A0496 0.26 +0.0 581,934 - Rru_A0496 0.26 +0.0 582,222 - +2.0 582,222 - +0.7 582,270 + +0.0 582,270 + +1.8 582,270 + +0.3 582,270 + +1.1 582,270 + -1.0 582,271 - -0.4 582,271 - +0.0 582,271 - +3.5 582,271 - +0.0 582,291 - +0.0 582,372 + +1.0 582,372 + +0.0 582,372 + +1.9 582,373 - +0.0 582,373 - +1.1 582,373 - +0.8 582,373 - +1.7 582,666 + Rru_A0497 0.36 +0.3 582,666 + Rru_A0497 0.36 +1.3 582,667 - Rru_A0497 0.36 +0.3 582,667 - Rru_A0497 0.36 +0.4 582,667 - Rru_A0497 0.36 +1.3 582,667 - Rru_A0497 0.36 +0.0
Or see this region's nucleotide sequence