Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0486 and Rru_A0487 are separated by 47 nucleotides Rru_A0487 and Rru_A0488 are separated by 336 nucleotides
Rru_A0486: Rru_A0486 - von Willebrand factor, type A (NCBI), at 570,084 to 571,901
_A0486
Rru_A0487: Rru_A0487 - Alpha/beta hydrolase fold (NCBI), at 571,949 to 572,881
_A0487
Rru_A0488: Rru_A0488 - TonB-dependent receptor (NCBI), at 573,218 to 575,266
_A0488
Position (kb) 571
572
573 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 571.446 kb on + strand, within Rru_A0486 at 571.446 kb on + strand, within Rru_A0486 at 571.447 kb on - strand, within Rru_A0486 at 571.447 kb on - strand, within Rru_A0486 at 571.447 kb on - strand, within Rru_A0486 at 571.447 kb on - strand, within Rru_A0486 at 571.836 kb on + strand at 571.836 kb on + strand at 571.836 kb on + strand at 571.868 kb on + strand at 571.868 kb on + strand at 571.868 kb on + strand at 571.869 kb on - strand at 571.869 kb on - strand at 571.869 kb on - strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.934 kb on + strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 571.935 kb on - strand at 572.444 kb on + strand, within Rru_A0487 at 572.444 kb on + strand, within Rru_A0487 at 572.444 kb on + strand, within Rru_A0487 at 572.444 kb on + strand, within Rru_A0487 at 572.444 kb on + strand, within Rru_A0487 at 572.444 kb on + strand, within Rru_A0487 at 572.446 kb on + strand, within Rru_A0487 at 572.446 kb on + strand, within Rru_A0487 at 572.447 kb on - strand, within Rru_A0487 at 572.447 kb on - strand, within Rru_A0487 at 572.447 kb on - strand, within Rru_A0487 at 572.483 kb on + strand, within Rru_A0487 at 572.483 kb on + strand, within Rru_A0487 at 572.483 kb on + strand, within Rru_A0487 at 572.484 kb on - strand, within Rru_A0487 at 572.484 kb on - strand, within Rru_A0487 at 572.484 kb on - strand, within Rru_A0487 at 572.484 kb on - strand, within Rru_A0487 at 572.484 kb on - strand, within Rru_A0487 at 572.484 kb on - strand, within Rru_A0487 at 572.573 kb on + strand, within Rru_A0487 at 572.573 kb on + strand, within Rru_A0487 at 572.573 kb on + strand, within Rru_A0487 at 572.573 kb on + strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.574 kb on - strand, within Rru_A0487 at 572.576 kb on + strand, within Rru_A0487 at 572.577 kb on - strand, within Rru_A0487 at 572.937 kb on - strand at 572.954 kb on - strand at 573.043 kb on - strand at 573.131 kb on + strand at 573.131 kb on + strand at 573.131 kb on + strand at 573.131 kb on + strand at 573.131 kb on + strand at 573.132 kb on - strand at 573.132 kb on - strand at 573.132 kb on - strand at 573.186 kb on + strand at 573.186 kb on + strand at 573.186 kb on + strand at 573.187 kb on - strand at 573.187 kb on - strand at 573.281 kb on + strand at 573.512 kb on + strand, within Rru_A0488 at 573.513 kb on - strand, within Rru_A0488 at 573.668 kb on + strand, within Rru_A0488
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 571,446 + Rru_A0486 0.75 -0.2 571,446 + Rru_A0486 0.75 +0.0 571,447 - Rru_A0486 0.75 +0.0 571,447 - Rru_A0486 0.75 -0.6 571,447 - Rru_A0486 0.75 -1.2 571,447 - Rru_A0486 0.75 +0.0 571,836 + +0.0 571,836 + -1.0 571,836 + +0.0 571,868 + +0.8 571,868 + +0.0 571,868 + +0.0 571,869 - +0.0 571,869 - +0.0 571,869 - +0.0 571,934 + +0.8 571,934 + +0.6 571,934 + +0.8 571,934 + -1.6 571,934 + +1.5 571,934 + +1.4 571,934 + +0.5 571,934 + +0.8 571,934 + +0.0 571,935 - +0.0 571,935 - +4.9 571,935 - +0.0 571,935 - -0.6 571,935 - +1.5 571,935 - +1.2 571,935 - +1.5 571,935 - -1.0 571,935 - +0.0 571,935 - +0.0 571,935 - +0.0 572,444 + Rru_A0487 0.53 +1.9 572,444 + Rru_A0487 0.53 +0.0 572,444 + Rru_A0487 0.53 -0.8 572,444 + Rru_A0487 0.53 +0.0 572,444 + Rru_A0487 0.53 +0.0 572,444 + Rru_A0487 0.53 +0.0 572,446 + Rru_A0487 0.53 +0.0 572,446 + Rru_A0487 0.53 +0.0 572,447 - Rru_A0487 0.53 +1.4 572,447 - Rru_A0487 0.53 +1.2 572,447 - Rru_A0487 0.53 +1.5 572,483 + Rru_A0487 0.57 +0.0 572,483 + Rru_A0487 0.57 +0.0 572,483 + Rru_A0487 0.57 +1.2 572,484 - Rru_A0487 0.57 +1.6 572,484 - Rru_A0487 0.57 +1.3 572,484 - Rru_A0487 0.57 +0.0 572,484 - Rru_A0487 0.57 +0.9 572,484 - Rru_A0487 0.57 +0.6 572,484 - Rru_A0487 0.57 +0.0 572,573 + Rru_A0487 0.67 +1.8 572,573 + Rru_A0487 0.67 +2.4 572,573 + Rru_A0487 0.67 +0.0 572,573 + Rru_A0487 0.67 +1.0 572,574 - Rru_A0487 0.67 +1.6 572,574 - Rru_A0487 0.67 +1.0 572,574 - Rru_A0487 0.67 -0.7 572,574 - Rru_A0487 0.67 +0.0 572,574 - Rru_A0487 0.67 +1.6 572,574 - Rru_A0487 0.67 +0.0 572,574 - Rru_A0487 0.67 +1.5 572,574 - Rru_A0487 0.67 +2.0 572,576 + Rru_A0487 0.67 -0.1 572,577 - Rru_A0487 0.67 +0.2 572,937 - +3.3 572,954 - +0.0 573,043 - +1.2 573,131 + +1.6 573,131 + +2.3 573,131 + +3.6 573,131 + +1.2 573,131 + +0.0 573,132 - +0.0 573,132 - -1.0 573,132 - +0.0 573,186 + -1.6 573,186 + +0.4 573,186 + +0.0 573,187 - -1.0 573,187 - +0.0 573,281 + +0.0 573,512 + Rru_A0488 0.14 +0.0 573,513 - Rru_A0488 0.14 +1.0 573,668 + Rru_A0488 0.22 +0.0
Or see this region's nucleotide sequence