Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0418 and Rru_A0419 are separated by 29 nucleotides Rru_A0419 and Rru_A0420 are separated by 18 nucleotides Rru_A0420 and Rru_A0421 are separated by 155 nucleotides Rru_A0421 and Rru_A0422 are separated by 95 nucleotides
Rru_A0418: Rru_A0418 - Beta-ketoacyl synthase (NCBI), at 493,901 to 495,163
_A0418
Rru_A0419: Rru_A0419 - Aminodeoxychorismate lyase (NCBI), at 495,193 to 496,179
_A0419
Rru_A0420: Rru_A0420 - hypothetical protein (NCBI), at 496,198 to 496,593
_A0420
Rru_A0421: Rru_A0421 - hypothetical protein (NCBI), at 496,749 to 497,075
_A0421
Rru_A0422: Rru_A0422 - hypothetical protein (NCBI), at 497,171 to 497,557
_A0422
Position (kb) 495
496
497 Strain fitness (log2 ratio) -1
0
1
2
3 at 495.187 kb on - strand at 495.257 kb on - strand at 495.257 kb on - strand at 495.257 kb on - strand at 495.257 kb on - strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.262 kb on + strand at 495.263 kb on - strand at 495.263 kb on - strand at 495.263 kb on - strand at 495.263 kb on - strand at 495.640 kb on + strand, within Rru_A0419 at 495.640 kb on + strand, within Rru_A0419 at 495.641 kb on - strand, within Rru_A0419 at 495.641 kb on - strand, within Rru_A0419 at 495.641 kb on - strand, within Rru_A0419 at 495.641 kb on - strand, within Rru_A0419 at 495.642 kb on + strand, within Rru_A0419 at 495.642 kb on + strand, within Rru_A0419 at 495.642 kb on + strand, within Rru_A0419 at 495.642 kb on + strand, within Rru_A0419 at 495.643 kb on - strand, within Rru_A0419 at 495.643 kb on - strand, within Rru_A0419 at 495.643 kb on - strand, within Rru_A0419 at 495.646 kb on + strand, within Rru_A0419 at 495.646 kb on + strand, within Rru_A0419 at 495.647 kb on - strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.067 kb on - strand, within Rru_A0419 at 496.067 kb on - strand, within Rru_A0419 at 496.067 kb on - strand, within Rru_A0419 at 496.199 kb on + strand at 496.200 kb on - strand at 496.456 kb on - strand, within Rru_A0420 at 496.657 kb on - strand at 496.750 kb on + strand at 496.979 kb on + strand, within Rru_A0421 at 497.008 kb on + strand, within Rru_A0421 at 497.009 kb on - strand, within Rru_A0421 at 497.009 kb on - strand, within Rru_A0421 at 497.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 495,187 - +0.0 495,257 - +0.0 495,257 - +0.5 495,257 - +0.0 495,257 - +0.0 495,262 + +2.6 495,262 + +2.4 495,262 + -1.0 495,262 + +1.4 495,262 + +0.7 495,262 + +0.0 495,262 + +0.0 495,263 - +0.0 495,263 - +0.0 495,263 - +0.0 495,263 - +0.0 495,640 + Rru_A0419 0.45 +1.8 495,640 + Rru_A0419 0.45 +0.0 495,641 - Rru_A0419 0.45 +1.2 495,641 - Rru_A0419 0.45 +1.3 495,641 - Rru_A0419 0.45 +0.0 495,641 - Rru_A0419 0.45 +1.3 495,642 + Rru_A0419 0.45 +1.4 495,642 + Rru_A0419 0.45 +2.1 495,642 + Rru_A0419 0.45 +0.0 495,642 + Rru_A0419 0.45 +0.0 495,643 - Rru_A0419 0.46 +0.6 495,643 - Rru_A0419 0.46 -1.0 495,643 - Rru_A0419 0.46 +0.0 495,646 + Rru_A0419 0.46 +0.0 495,646 + Rru_A0419 0.46 +0.0 495,647 - Rru_A0419 0.46 +0.3 495,892 + Rru_A0419 0.71 -1.0 495,892 + Rru_A0419 0.71 +0.3 495,892 + Rru_A0419 0.71 +0.0 495,892 + Rru_A0419 0.71 +0.0 495,892 + Rru_A0419 0.71 +0.0 495,892 + Rru_A0419 0.71 +1.3 495,893 - Rru_A0419 0.71 +0.0 495,893 - Rru_A0419 0.71 +1.9 495,893 - Rru_A0419 0.71 +1.5 495,893 - Rru_A0419 0.71 +1.0 495,893 - Rru_A0419 0.71 +3.3 495,893 - Rru_A0419 0.71 +0.0 495,973 + Rru_A0419 0.79 +0.0 495,973 + Rru_A0419 0.79 +0.0 495,973 + Rru_A0419 0.79 +2.7 495,973 + Rru_A0419 0.79 +0.0 495,973 + Rru_A0419 0.79 +1.0 495,973 + Rru_A0419 0.79 +1.6 495,973 + Rru_A0419 0.79 +0.8 495,973 + Rru_A0419 0.79 +1.6 495,974 - Rru_A0419 0.79 +1.5 495,974 - Rru_A0419 0.79 +1.0 495,974 - Rru_A0419 0.79 +0.7 495,974 - Rru_A0419 0.79 +0.6 495,974 - Rru_A0419 0.79 +0.9 496,066 + Rru_A0419 0.88 +0.0 496,066 + Rru_A0419 0.88 +1.5 496,066 + Rru_A0419 0.88 +1.5 496,066 + Rru_A0419 0.88 +1.6 496,067 - Rru_A0419 0.89 +0.7 496,067 - Rru_A0419 0.89 +0.0 496,067 - Rru_A0419 0.89 +2.5 496,199 + +2.0 496,200 - +0.0 496,456 - Rru_A0420 0.65 +0.7 496,657 - +0.9 496,750 + +1.6 496,979 + Rru_A0421 0.70 +1.6 497,008 + Rru_A0421 0.79 +0.0 497,009 - Rru_A0421 0.80 +1.6 497,009 - Rru_A0421 0.80 +2.1 497,112 - +1.0
Or see this region's nucleotide sequence