Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0404

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0402 and Rru_A0403 are separated by 33 nucleotidesRru_A0403 and Rru_A0404 are separated by 154 nucleotidesRru_A0404 and Rru_A0405 are separated by 45 nucleotidesRru_A0405 and Rru_A0406 overlap by 1 nucleotides Rru_A0402: Rru_A0402 - hypothetical protein (NCBI), at 479,258 to 479,857 _A0402 Rru_A0403: Rru_A0403 - Short-chain dehydrogenase/reductase SDR (NCBI), at 479,891 to 480,604 _A0403 Rru_A0404: Rru_A0404 - Amidophosphoribosyl transferase (NCBI), at 480,759 to 482,225 _A0404 Rru_A0405: Rru_A0405 - Colicin V production protein (NCBI), at 482,271 to 482,981 _A0405 Rru_A0406: Rru_A0406 - DNA repair protein RadA (NCBI), at 482,981 to 484,390 _A0406 Position (kb) 480 481 482 483Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 479.892 kb on + strandat 479.893 kb on - strandat 480.133 kb on - strand, within Rru_A0403at 480.144 kb on + strand, within Rru_A0403at 480.241 kb on - strand, within Rru_A0403at 480.730 kb on + strandat 480.731 kb on - strandat 480.761 kb on - strandat 480.967 kb on + strand, within Rru_A0404at 480.967 kb on + strand, within Rru_A0404at 480.967 kb on + strand, within Rru_A0404at 480.968 kb on - strand, within Rru_A0404at 480.968 kb on - strand, within Rru_A0404at 480.968 kb on - strand, within Rru_A0404at 481.012 kb on + strand, within Rru_A0404at 481.012 kb on + strand, within Rru_A0404at 481.013 kb on - strand, within Rru_A0404at 481.013 kb on - strand, within Rru_A0404at 481.013 kb on - strand, within Rru_A0404at 481.013 kb on - strand, within Rru_A0404at 481.013 kb on - strand, within Rru_A0404at 481.013 kb on - strand, within Rru_A0404at 481.024 kb on + strand, within Rru_A0404at 481.025 kb on - strand, within Rru_A0404at 481.052 kb on + strand, within Rru_A0404at 481.052 kb on + strand, within Rru_A0404at 481.052 kb on + strand, within Rru_A0404at 481.052 kb on + strand, within Rru_A0404at 481.052 kb on + strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.240 kb on + strand, within Rru_A0404at 481.240 kb on + strand, within Rru_A0404at 481.240 kb on + strand, within Rru_A0404at 481.240 kb on + strand, within Rru_A0404at 481.240 kb on + strand, within Rru_A0404at 481.241 kb on - strand, within Rru_A0404at 481.241 kb on - strand, within Rru_A0404at 481.241 kb on - strand, within Rru_A0404at 481.241 kb on - strand, within Rru_A0404at 481.241 kb on - strand, within Rru_A0404at 481.261 kb on + strand, within Rru_A0404at 481.292 kb on - strand, within Rru_A0404at 481.396 kb on + strand, within Rru_A0404at 481.397 kb on - strand, within Rru_A0404at 481.438 kb on + strand, within Rru_A0404at 481.438 kb on + strand, within Rru_A0404at 481.438 kb on + strand, within Rru_A0404at 481.439 kb on - strand, within Rru_A0404at 481.439 kb on - strand, within Rru_A0404at 481.439 kb on - strand, within Rru_A0404at 481.439 kb on - strand, within Rru_A0404at 481.439 kb on - strand, within Rru_A0404at 481.444 kb on + strand, within Rru_A0404at 481.444 kb on + strand, within Rru_A0404at 481.444 kb on + strand, within Rru_A0404at 481.444 kb on + strand, within Rru_A0404at 481.444 kb on + strand, within Rru_A0404at 481.445 kb on - strand, within Rru_A0404at 481.445 kb on - strand, within Rru_A0404at 481.445 kb on - strand, within Rru_A0404at 481.445 kb on - strand, within Rru_A0404at 481.445 kb on - strand, within Rru_A0404at 481.445 kb on - strand, within Rru_A0404at 481.549 kb on + strand, within Rru_A0404at 481.550 kb on - strand, within Rru_A0404at 481.565 kb on + strand, within Rru_A0404at 481.566 kb on - strand, within Rru_A0404at 481.595 kb on + strand, within Rru_A0404at 481.595 kb on + strand, within Rru_A0404at 481.596 kb on - strand, within Rru_A0404at 481.597 kb on + strand, within Rru_A0404at 481.597 kb on + strand, within Rru_A0404at 481.598 kb on - strand, within Rru_A0404at 481.598 kb on - strand, within Rru_A0404at 481.690 kb on + strand, within Rru_A0404at 481.691 kb on - strand, within Rru_A0404at 481.691 kb on - strand, within Rru_A0404at 481.859 kb on + strand, within Rru_A0404at 481.860 kb on - strand, within Rru_A0404at 481.910 kb on + strand, within Rru_A0404at 481.911 kb on - strand, within Rru_A0404at 482.118 kb on - strandat 482.238 kb on + strandat 482.238 kb on + strandat 482.238 kb on + strandat 482.238 kb on + strandat 482.238 kb on + strandat 482.238 kb on + strandat 482.239 kb on - strandat 482.273 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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479,892 + +0.0
479,893 - +0.0
480,133 - Rru_A0403 0.34 +0.0
480,144 + Rru_A0403 0.35 +0.0
480,241 - Rru_A0403 0.49 +0.0
480,730 + +1.6
480,731 - +2.3
480,761 - +0.0
480,967 + Rru_A0404 0.14 +0.1
480,967 + Rru_A0404 0.14 +0.1
480,967 + Rru_A0404 0.14 -2.3
480,968 - Rru_A0404 0.14 +1.9
480,968 - Rru_A0404 0.14 -0.1
480,968 - Rru_A0404 0.14 +0.4
481,012 + Rru_A0404 0.17 -1.6
481,012 + Rru_A0404 0.17 +0.1
481,013 - Rru_A0404 0.17 +0.5
481,013 - Rru_A0404 0.17 +0.0
481,013 - Rru_A0404 0.17 -0.0
481,013 - Rru_A0404 0.17 +0.0
481,013 - Rru_A0404 0.17 +0.5
481,013 - Rru_A0404 0.17 -0.3
481,024 + Rru_A0404 0.18 +0.0
481,025 - Rru_A0404 0.18 +0.8
481,052 + Rru_A0404 0.20 +0.0
481,052 + Rru_A0404 0.20 +0.6
481,052 + Rru_A0404 0.20 +0.3
481,052 + Rru_A0404 0.20 -0.0
481,052 + Rru_A0404 0.20 -0.4
481,053 - Rru_A0404 0.20 -1.7
481,053 - Rru_A0404 0.20 +2.0
481,053 - Rru_A0404 0.20 +1.1
481,053 - Rru_A0404 0.20 +2.0
481,053 - Rru_A0404 0.20 +1.2
481,053 - Rru_A0404 0.20 +0.4
481,053 - Rru_A0404 0.20 +0.1
481,053 - Rru_A0404 0.20 +0.8
481,053 - Rru_A0404 0.20 +0.0
481,053 - Rru_A0404 0.20 +0.3
481,053 - Rru_A0404 0.20 +0.0
481,053 - Rru_A0404 0.20 +0.4
481,240 + Rru_A0404 0.33 -0.6
481,240 + Rru_A0404 0.33 +0.3
481,240 + Rru_A0404 0.33 +0.7
481,240 + Rru_A0404 0.33 +0.6
481,240 + Rru_A0404 0.33 +0.0
481,241 - Rru_A0404 0.33 +0.5
481,241 - Rru_A0404 0.33 +0.5
481,241 - Rru_A0404 0.33 -0.1
481,241 - Rru_A0404 0.33 +0.0
481,241 - Rru_A0404 0.33 +0.1
481,261 + Rru_A0404 0.34 -1.0
481,292 - Rru_A0404 0.36 -0.5
481,396 + Rru_A0404 0.43 +0.6
481,397 - Rru_A0404 0.43 +1.2
481,438 + Rru_A0404 0.46 +0.4
481,438 + Rru_A0404 0.46 -1.0
481,438 + Rru_A0404 0.46 +0.0
481,439 - Rru_A0404 0.46 +0.6
481,439 - Rru_A0404 0.46 -0.4
481,439 - Rru_A0404 0.46 +0.0
481,439 - Rru_A0404 0.46 +0.6
481,439 - Rru_A0404 0.46 +0.3
481,444 + Rru_A0404 0.47 +0.0
481,444 + Rru_A0404 0.47 -1.0
481,444 + Rru_A0404 0.47 +0.0
481,444 + Rru_A0404 0.47 -0.9
481,444 + Rru_A0404 0.47 +1.6
481,445 - Rru_A0404 0.47 +0.1
481,445 - Rru_A0404 0.47 +0.0
481,445 - Rru_A0404 0.47 +0.3
481,445 - Rru_A0404 0.47 +1.0
481,445 - Rru_A0404 0.47 +1.6
481,445 - Rru_A0404 0.47 +2.3
481,549 + Rru_A0404 0.54 +0.0
481,550 - Rru_A0404 0.54 +0.2
481,565 + Rru_A0404 0.55 +0.0
481,566 - Rru_A0404 0.55 -1.0
481,595 + Rru_A0404 0.57 +0.0
481,595 + Rru_A0404 0.57 -2.0
481,596 - Rru_A0404 0.57 +0.4
481,597 + Rru_A0404 0.57 +0.3
481,597 + Rru_A0404 0.57 +0.0
481,598 - Rru_A0404 0.57 -0.1
481,598 - Rru_A0404 0.57 +0.3
481,690 + Rru_A0404 0.63 +0.6
481,691 - Rru_A0404 0.64 +0.6
481,691 - Rru_A0404 0.64 -0.3
481,859 + Rru_A0404 0.75 -3.2
481,860 - Rru_A0404 0.75 +0.0
481,910 + Rru_A0404 0.78 -0.1
481,911 - Rru_A0404 0.79 +0.4
482,118 - +2.5
482,238 + +0.5
482,238 + +1.6
482,238 + -1.0
482,238 + -1.2
482,238 + +0.0
482,238 + +1.3
482,239 - +0.0
482,273 - +1.7

Or see this region's nucleotide sequence