Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0396 and Rru_A0397 are separated by 420 nucleotides Rru_A0397 and Rru_A0398 overlap by 2 nucleotides Rru_A0398 and Rru_A0399 overlap by 6 nucleotides
Rru_A0396: Rru_A0396 - Diaminopimelate decarboxylase (NCBI), at 472,310 to 473,587
_A0396
Rru_A0397: Rru_A0397 - Argininosuccinate lyase (NCBI), at 474,008 to 475,444
_A0397
Rru_A0398: Rru_A0398 - Thiol-disulfide isomerase and thioredoxins-like (NCBI), at 475,443 to 476,114
_A0398
Rru_A0399: Rru_A0399 - Phosphoesterase, PA-phosphatase related (NCBI), at 476,109 to 476,846
_A0399
Position (kb) 474
475
476 Strain fitness (log2 ratio) -2
-1
0
1
2 at 473.581 kb on - strand at 473.881 kb on + strand at 473.882 kb on - strand at 473.899 kb on + strand at 474.454 kb on - strand, within Rru_A0397 at 474.454 kb on - strand, within Rru_A0397 at 474.585 kb on + strand, within Rru_A0397 at 474.585 kb on + strand, within Rru_A0397 at 474.586 kb on - strand, within Rru_A0397 at 474.586 kb on - strand, within Rru_A0397 at 474.889 kb on - strand, within Rru_A0397 at 474.889 kb on - strand, within Rru_A0397 at 475.142 kb on - strand, within Rru_A0397 at 475.142 kb on - strand, within Rru_A0397 at 475.299 kb on - strand, within Rru_A0397 at 475.299 kb on - strand, within Rru_A0397 at 475.301 kb on - strand at 475.897 kb on - strand, within Rru_A0398 at 476.033 kb on + strand, within Rru_A0398 at 476.034 kb on - strand, within Rru_A0398 at 476.034 kb on - strand, within Rru_A0398 at 476.111 kb on - strand at 476.111 kb on - strand at 476.112 kb on + strand at 476.112 kb on + strand at 476.113 kb on - strand at 476.113 kb on - strand at 476.194 kb on + strand, within Rru_A0399 at 476.195 kb on - strand, within Rru_A0399 at 476.221 kb on + strand, within Rru_A0399 at 476.256 kb on + strand, within Rru_A0399 at 476.256 kb on + strand, within Rru_A0399
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 473,581 - +0.4 473,881 + +1.7 473,882 - +0.9 473,899 + +1.7 474,454 - Rru_A0397 0.31 +0.0 474,454 - Rru_A0397 0.31 +0.0 474,585 + Rru_A0397 0.40 -1.1 474,585 + Rru_A0397 0.40 +0.0 474,586 - Rru_A0397 0.40 +0.0 474,586 - Rru_A0397 0.40 -1.9 474,889 - Rru_A0397 0.61 +0.0 474,889 - Rru_A0397 0.61 -1.4 475,142 - Rru_A0397 0.79 -1.0 475,142 - Rru_A0397 0.79 -0.9 475,299 - Rru_A0397 0.90 -1.5 475,299 - Rru_A0397 0.90 -1.0 475,301 - -0.3 475,897 - Rru_A0398 0.68 +0.0 476,033 + Rru_A0398 0.88 +0.0 476,034 - Rru_A0398 0.88 +0.9 476,034 - Rru_A0398 0.88 +0.0 476,111 - +1.8 476,111 - +1.2 476,112 + +0.0 476,112 + +0.0 476,113 - +0.0 476,113 - +2.2 476,194 + Rru_A0399 0.12 +0.0 476,195 - Rru_A0399 0.12 +0.0 476,221 + Rru_A0399 0.15 +0.0 476,256 + Rru_A0399 0.20 +0.0 476,256 + Rru_A0399 0.20 +0.0
Or see this region's nucleotide sequence