Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0390

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0388 and Rru_A0389 overlap by 59 nucleotidesRru_A0389 and Rru_A0390 are separated by 188 nucleotidesRru_A0390 and Rru_AR0015 are separated by 115 nucleotidesRru_AR0015 and Rru_A0391 are separated by 83 nucleotidesRru_A0391 and Rru_A0392 are separated by 27 nucleotides Rru_A0388: Rru_A0388 - Protein of unknown function DUF6, transmembrane (NCBI), at 465,562 to 466,524 _A0388 Rru_A0389: Rru_A0389 - Antibiotic biosynthesis monooxygenase (NCBI), at 466,466 to 466,756 _A0389 Rru_A0390: Rru_A0390 - hypothetical protein (NCBI), at 466,945 to 467,925 _A0390 Rru_AR0015: Rru_AR0015 - tRNA-Leu (NCBI), at 468,041 to 468,126 _AR0015 Rru_A0391: Rru_A0391 - hypothetical protein (NCBI), at 468,210 to 468,458 _A0391 Rru_A0392: Rru_A0392 - Molybdopterin binding domain (NCBI), at 468,486 to 469,253 _A0392 Position (kb) 466 467 468Strain fitness (log2 ratio) -2 -1 0 1 2 3at 466.064 kb on - strand, within Rru_A0388at 466.064 kb on - strand, within Rru_A0388at 466.064 kb on - strand, within Rru_A0388at 466.267 kb on + strand, within Rru_A0388at 466.267 kb on + strand, within Rru_A0388at 466.268 kb on - strand, within Rru_A0388at 466.268 kb on - strand, within Rru_A0388at 466.268 kb on - strand, within Rru_A0388at 466.318 kb on + strand, within Rru_A0388at 466.319 kb on - strand, within Rru_A0388at 466.645 kb on - strand, within Rru_A0389at 466.645 kb on - strand, within Rru_A0389at 466.645 kb on - strand, within Rru_A0389at 466.715 kb on - strand, within Rru_A0389at 466.715 kb on - strand, within Rru_A0389at 466.750 kb on + strandat 466.750 kb on + strandat 466.750 kb on + strandat 466.864 kb on + strandat 466.864 kb on + strandat 466.865 kb on - strandat 466.865 kb on - strandat 466.984 kb on + strandat 466.984 kb on + strandat 466.984 kb on + strandat 466.985 kb on - strandat 466.985 kb on - strandat 466.985 kb on - strandat 466.985 kb on - strandat 467.017 kb on + strandat 467.017 kb on + strandat 467.018 kb on - strandat 467.018 kb on - strandat 467.029 kb on + strandat 467.029 kb on + strandat 467.029 kb on + strandat 467.030 kb on - strandat 467.030 kb on - strandat 467.049 kb on + strand, within Rru_A0390at 467.143 kb on + strand, within Rru_A0390at 467.143 kb on + strand, within Rru_A0390at 467.143 kb on + strand, within Rru_A0390at 467.143 kb on + strand, within Rru_A0390at 467.144 kb on - strand, within Rru_A0390at 467.144 kb on - strand, within Rru_A0390at 467.158 kb on + strand, within Rru_A0390at 467.159 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.331 kb on + strand, within Rru_A0390at 467.331 kb on + strand, within Rru_A0390at 467.335 kb on + strand, within Rru_A0390at 467.335 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.408 kb on - strand, within Rru_A0390at 467.408 kb on - strand, within Rru_A0390at 467.408 kb on - strand, within Rru_A0390at 467.449 kb on - strand, within Rru_A0390at 467.776 kb on + strand, within Rru_A0390at 467.776 kb on + strand, within Rru_A0390at 467.777 kb on - strand, within Rru_A0390at 467.871 kb on + strandat 467.872 kb on - strandat 467.988 kb on - strandat 468.168 kb on - strandat 468.168 kb on - strandat 468.301 kb on + strand, within Rru_A0391at 468.302 kb on - strand, within Rru_A0391at 468.302 kb on - strand, within Rru_A0391at 468.302 kb on - strand, within Rru_A0391at 468.628 kb on + strand, within Rru_A0392at 468.628 kb on + strand, within Rru_A0392at 468.628 kb on + strand, within Rru_A0392at 468.629 kb on - strand, within Rru_A0392at 468.629 kb on - strand, within Rru_A0392at 468.629 kb on - strand, within Rru_A0392at 468.629 kb on - strand, within Rru_A0392at 468.629 kb on - strand, within Rru_A0392at 468.925 kb on + strand, within Rru_A0392at 468.925 kb on + strand, within Rru_A0392

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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466,064 - Rru_A0388 0.52 +0.0
466,064 - Rru_A0388 0.52 +1.4
466,064 - Rru_A0388 0.52 -1.0
466,267 + Rru_A0388 0.73 +0.0
466,267 + Rru_A0388 0.73 -1.0
466,268 - Rru_A0388 0.73 +0.9
466,268 - Rru_A0388 0.73 +0.0
466,268 - Rru_A0388 0.73 +1.8
466,318 + Rru_A0388 0.79 -1.0
466,319 - Rru_A0388 0.79 +1.7
466,645 - Rru_A0389 0.62 +0.0
466,645 - Rru_A0389 0.62 +2.5
466,645 - Rru_A0389 0.62 +1.2
466,715 - Rru_A0389 0.86 +2.0
466,715 - Rru_A0389 0.86 +1.2
466,750 + +0.7
466,750 + +0.0
466,750 + +0.0
466,864 + +0.5
466,864 + +0.6
466,865 - +1.1
466,865 - +1.6
466,984 + +1.2
466,984 + +0.0
466,984 + +0.0
466,985 - +0.0
466,985 - -1.0
466,985 - +0.0
466,985 - +2.0
467,017 + +1.6
467,017 + +0.0
467,018 - +0.0
467,018 - +1.1
467,029 + +1.7
467,029 + +0.6
467,029 + +1.0
467,030 - +1.7
467,030 - -0.2
467,049 + Rru_A0390 0.11 -1.8
467,143 + Rru_A0390 0.20 +1.6
467,143 + Rru_A0390 0.20 +0.9
467,143 + Rru_A0390 0.20 +0.3
467,143 + Rru_A0390 0.20 +1.5
467,144 - Rru_A0390 0.20 +0.0
467,144 - Rru_A0390 0.20 +1.2
467,158 + Rru_A0390 0.22 +0.3
467,159 - Rru_A0390 0.22 +0.0
467,200 - Rru_A0390 0.26 +1.8
467,200 - Rru_A0390 0.26 +0.4
467,200 - Rru_A0390 0.26 +0.4
467,200 - Rru_A0390 0.26 +1.2
467,200 - Rru_A0390 0.26 -0.6
467,200 - Rru_A0390 0.26 +0.6
467,200 - Rru_A0390 0.26 +0.9
467,331 + Rru_A0390 0.39 +0.6
467,331 + Rru_A0390 0.39 +0.0
467,335 + Rru_A0390 0.40 +1.3
467,335 + Rru_A0390 0.40 -1.6
467,407 + Rru_A0390 0.47 +0.0
467,407 + Rru_A0390 0.47 +0.0
467,407 + Rru_A0390 0.47 +2.5
467,407 + Rru_A0390 0.47 +0.0
467,407 + Rru_A0390 0.47 -2.0
467,407 + Rru_A0390 0.47 +1.5
467,407 + Rru_A0390 0.47 +0.5
467,407 + Rru_A0390 0.47 +0.1
467,407 + Rru_A0390 0.47 +0.0
467,408 - Rru_A0390 0.47 +1.0
467,408 - Rru_A0390 0.47 +0.0
467,408 - Rru_A0390 0.47 +1.7
467,449 - Rru_A0390 0.51 +0.9
467,776 + Rru_A0390 0.85 +2.8
467,776 + Rru_A0390 0.85 +1.4
467,777 - Rru_A0390 0.85 +0.0
467,871 + +0.0
467,872 - +0.0
467,988 - +0.0
468,168 - +0.0
468,168 - +0.6
468,301 + Rru_A0391 0.37 +0.8
468,302 - Rru_A0391 0.37 +1.0
468,302 - Rru_A0391 0.37 +0.8
468,302 - Rru_A0391 0.37 -0.3
468,628 + Rru_A0392 0.18 +0.0
468,628 + Rru_A0392 0.18 +1.2
468,628 + Rru_A0392 0.18 +1.6
468,629 - Rru_A0392 0.19 +2.3
468,629 - Rru_A0392 0.19 +1.0
468,629 - Rru_A0392 0.19 +1.4
468,629 - Rru_A0392 0.19 +0.0
468,629 - Rru_A0392 0.19 +1.5
468,925 + Rru_A0392 0.57 +1.4
468,925 + Rru_A0392 0.57 +0.0

Or see this region's nucleotide sequence