Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0363 and Rru_A0364 are separated by 13 nucleotides Rru_A0364 and Rru_A0365 are separated by 361 nucleotides Rru_A0365 and Rru_A0366 are separated by 1 nucleotides
Rru_A0363: Rru_A0363 - Cytochrome b/b6-like (NCBI), at 437,366 to 438,583
_A0363
Rru_A0364: Rru_A0364 - ubiquinol-cytochrome c reductase, iron-sulfur subunit (NCBI), at 438,597 to 439,148
_A0364
Rru_A0365: Rru_A0365 - tRNA/rRNA methyltransferase (SpoU) (NCBI), at 439,510 to 439,992
_A0365
Rru_A0366: Rru_A0366 - Polynucleotide adenylyltransferase region (NCBI), at 439,994 to 441,571
_A0366
Position (kb) 439
440 Strain fitness (log2 ratio) -1
0
1
2 at 439.226 kb on - strand at 439.247 kb on - strand at 439.322 kb on - strand at 439.428 kb on + strand at 439.429 kb on - strand at 439.431 kb on - strand at 439.431 kb on - strand at 439.431 kb on - strand at 439.431 kb on - strand at 439.520 kb on + strand at 439.520 kb on + strand at 439.528 kb on + strand at 439.529 kb on - strand at 439.529 kb on - strand at 439.562 kb on + strand, within Rru_A0365 at 439.562 kb on + strand, within Rru_A0365 at 439.562 kb on + strand, within Rru_A0365 at 439.563 kb on - strand, within Rru_A0365 at 439.563 kb on - strand, within Rru_A0365 at 439.566 kb on - strand, within Rru_A0365 at 439.604 kb on + strand, within Rru_A0365 at 439.605 kb on - strand, within Rru_A0365 at 439.605 kb on - strand, within Rru_A0365 at 439.605 kb on - strand, within Rru_A0365 at 439.640 kb on + strand, within Rru_A0365 at 439.660 kb on + strand, within Rru_A0365 at 439.661 kb on - strand, within Rru_A0365 at 439.995 kb on + strand at 439.995 kb on + strand at 439.995 kb on + strand at 439.995 kb on + strand at 439.996 kb on - strand at 439.996 kb on - strand at 439.996 kb on - strand at 439.996 kb on - strand at 439.996 kb on - strand at 439.997 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 439,226 - -0.0 439,247 - +1.9 439,322 - -0.0 439,428 + -0.0 439,429 - +1.4 439,431 - +0.4 439,431 - +0.6 439,431 - -0.0 439,431 - +0.5 439,520 + -1.0 439,520 + +1.0 439,528 + -0.0 439,529 - -0.0 439,529 - +1.2 439,562 + Rru_A0365 0.11 -0.0 439,562 + Rru_A0365 0.11 -0.0 439,562 + Rru_A0365 0.11 +1.0 439,563 - Rru_A0365 0.11 +0.7 439,563 - Rru_A0365 0.11 -0.0 439,566 - Rru_A0365 0.12 -0.0 439,604 + Rru_A0365 0.19 +1.2 439,605 - Rru_A0365 0.20 +1.8 439,605 - Rru_A0365 0.20 -0.0 439,605 - Rru_A0365 0.20 +1.3 439,640 + Rru_A0365 0.27 +1.0 439,660 + Rru_A0365 0.31 +2.3 439,661 - Rru_A0365 0.31 +1.4 439,995 + +2.2 439,995 + +2.3 439,995 + -0.0 439,995 + -0.0 439,996 - -1.0 439,996 - -0.0 439,996 - +2.1 439,996 - -0.0 439,996 - -0.0 439,997 + +0.5
Or see this region's nucleotide sequence