Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0347

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0345 and Rru_A0346 overlap by 4 nucleotidesRru_A0346 and Rru_A0347 are separated by 10 nucleotidesRru_A0347 and Rru_A0348 overlap by 1 nucleotidesRru_A0348 and 11438613 are separated by 57 nucleotides11438613 and 11580976 overlap by 28 nucleotides11580976 and 11723368 overlap by 28 nucleotides11723368 and 11438614 are separated by 0 nucleotides11438614 and 11580977 overlap by 33 nucleotides11580977 and 11723369 overlap by 33 nucleotides11723369 and 11438615 are separated by 0 nucleotides11438615 and 11580978 overlap by 28 nucleotides11580978 and 11723370 overlap by 28 nucleotides11723370 and 11438616 are separated by 0 nucleotides11438616 and 11580979 overlap by 33 nucleotides11580979 and 11723371 overlap by 33 nucleotides11723371 and 11438617 are separated by 0 nucleotides11438617 and 11580980 overlap by 28 nucleotides11580980 and 11723372 overlap by 28 nucleotides11723372 and 11438618 are separated by 0 nucleotides11438618 and 11580981 overlap by 33 nucleotides11580981 and 11723373 overlap by 33 nucleotides11723373 and 11438619 are separated by 0 nucleotides11438619 and 11580982 overlap by 28 nucleotides11580982 and 11723374 overlap by 28 nucleotides11723374 and 11438620 are separated by 0 nucleotides11438620 and 11580983 overlap by 33 nucleotides11580983 and 11723375 overlap by 33 nucleotides11723375 and 11438621 are separated by 0 nucleotides11438621 and 11580984 overlap by 28 nucleotides11580984 and 11723376 overlap by 28 nucleotides11723376 and 11438622 are separated by 0 nucleotides11438622 and 11580985 overlap by 33 nucleotides11580985 and 11723377 overlap by 33 nucleotides11723377 and 11438623 are separated by 0 nucleotides11438623 and 11580986 overlap by 28 nucleotides11580986 and 11723378 overlap by 28 nucleotides11723378 and 11438624 are separated by 0 nucleotides11438624 and 11580987 overlap by 33 nucleotides11580987 and 11723379 overlap by 33 nucleotides11723379 and 11438625 are separated by 0 nucleotides11438625 and 11580988 overlap by 28 nucleotides11580988 and 11723380 overlap by 28 nucleotides11723380 and 11438626 are separated by 0 nucleotides11438626 and 11580989 overlap by 33 nucleotides11580989 and 11723381 overlap by 33 nucleotides11723381 and 11438627 are separated by 0 nucleotides11438627 and 11580990 overlap by 28 nucleotides11580990 and 11723382 overlap by 28 nucleotides11723382 and 11438628 are separated by 0 nucleotides11438628 and 11580991 overlap by 33 nucleotides11580991 and 11723383 overlap by 33 nucleotides11723383 and 11438629 are separated by 0 nucleotides11438629 and 11580992 overlap by 28 nucleotides11580992 and 11723384 overlap by 28 nucleotides11723384 and 11438630 are separated by 0 nucleotides11438630 and 11580993 overlap by 33 nucleotides11580993 and 11723385 overlap by 33 nucleotides11723385 and 11438631 are separated by 0 nucleotides11438631 and 11580994 overlap by 28 nucleotides11580994 and 11723386 overlap by 28 nucleotides11723386 and 11438632 are separated by 0 nucleotides11438632 and 11580995 overlap by 33 nucleotides11580995 and 11723387 overlap by 33 nucleotides11723387 and 11438633 are separated by 0 nucleotides Rru_A0345: Rru_A0345 - CRISPR-associated protein, CT1976 (NCBI), at 417,583 to 418,332 _A0345 Rru_A0346: Rru_A0346 - CRISPR-associated protein, CT1974 family (NCBI), at 418,329 to 419,060 _A0346 Rru_A0347: Rru_A0347 - Protein of unknown function DUF48 (NCBI), at 419,071 to 419,952 _A0347 Rru_A0348: Rru_A0348 - CRISPR-associated protein, Cas2 (NCBI), at 419,952 to 420,275 _A0348 11438613 - no description, at 420,333 to 420,360 11438613 11580976 - no description, at 420,333 to 420,360 11580976 11723368 - no description, at 420,333 to 420,360 11723368 11438614 - no description, at 420,361 to 420,393 11438614 11580977 - no description, at 420,361 to 420,393 11580977 11723369 - no description, at 420,361 to 420,393 11723369 11438615 - no description, at 420,394 to 420,421 11438615 11580978 - no description, at 420,394 to 420,421 11580978 11723370 - no description, at 420,394 to 420,421 11723370 11438616 - no description, at 420,422 to 420,454 11438616 11580979 - no description, at 420,422 to 420,454 11580979 11723371 - no description, at 420,422 to 420,454 11723371 11438617 - no description, at 420,455 to 420,482 11438617 11580980 - no description, at 420,455 to 420,482 11580980 11723372 - no description, at 420,455 to 420,482 11723372 11438618 - no description, at 420,483 to 420,515 11438618 11580981 - no description, at 420,483 to 420,515 11580981 11723373 - no description, at 420,483 to 420,515 11723373 11438619 - no description, at 420,516 to 420,543 11438619 11580982 - no description, at 420,516 to 420,543 11580982 11723374 - no description, at 420,516 to 420,543 11723374 11438620 - no description, at 420,544 to 420,576 11438620 11580983 - no description, at 420,544 to 420,576 11580983 11723375 - no description, at 420,544 to 420,576 11723375 11438621 - no description, at 420,577 to 420,604 11438621 11580984 - no description, at 420,577 to 420,604 11580984 11723376 - no description, at 420,577 to 420,604 11723376 11438622 - no description, at 420,605 to 420,637 11438622 11580985 - no description, at 420,605 to 420,637 11580985 11723377 - no description, at 420,605 to 420,637 11723377 11438623 - no description, at 420,638 to 420,665 11438623 11580986 - no description, at 420,638 to 420,665 11580986 11723378 - no description, at 420,638 to 420,665 11723378 11438624 - no description, at 420,666 to 420,698 11438624 11580987 - no description, at 420,666 to 420,698 11580987 11723379 - no description, at 420,666 to 420,698 11723379 11438625 - no description, at 420,699 to 420,726 11438625 11580988 - no description, at 420,699 to 420,726 11580988 11723380 - no description, at 420,699 to 420,726 11723380 11438626 - no description, at 420,727 to 420,759 11438626 11580989 - no description, at 420,727 to 420,759 11580989 11723381 - no description, at 420,727 to 420,759 11723381 11438627 - no description, at 420,760 to 420,787 11438627 11580990 - no description, at 420,760 to 420,787 11580990 11723382 - no description, at 420,760 to 420,787 11723382 11438628 - no description, at 420,788 to 420,820 11438628 11580991 - no description, at 420,788 to 420,820 11580991 11723383 - no description, at 420,788 to 420,820 11723383 11438629 - no description, at 420,821 to 420,848 11438629 11580992 - no description, at 420,821 to 420,848 11580992 11723384 - no description, at 420,821 to 420,848 11723384 11438630 - no description, at 420,849 to 420,881 11438630 11580993 - no description, at 420,849 to 420,881 11580993 11723385 - no description, at 420,849 to 420,881 11723385 11438631 - no description, at 420,882 to 420,909 11438631 11580994 - no description, at 420,882 to 420,909 11580994 11723386 - no description, at 420,882 to 420,909 11723386 11438632 - no description, at 420,910 to 420,942 11438632 11580995 - no description, at 420,910 to 420,942 11580995 11723387 - no description, at 420,910 to 420,942 11723387 11438633 - no description, at 420,943 to 420,970 11438633 11580996 - no description, at 420,943 to 420,970 11580996 11723388 - no description, at 420,943 to 420,970 11723388 Position (kb) 419 420Strain fitness (log2 ratio) -1 0 1 2 3at 418.328 kb on + strandat 418.328 kb on + strandat 418.328 kb on + strandat 418.328 kb on + strandat 418.341 kb on + strandat 419.353 kb on + strand, within Rru_A0347at 419.354 kb on - strand, within Rru_A0347at 419.355 kb on + strand, within Rru_A0347at 419.405 kb on + strand, within Rru_A0347at 419.406 kb on - strand, within Rru_A0347at 419.406 kb on - strand, within Rru_A0347at 419.455 kb on + strand, within Rru_A0347at 419.455 kb on + strand, within Rru_A0347at 419.455 kb on + strand, within Rru_A0347at 419.455 kb on + strand, within Rru_A0347at 419.455 kb on + strand, within Rru_A0347at 419.455 kb on + strand, within Rru_A0347at 419.455 kb on + strand, within Rru_A0347at 419.456 kb on - strand, within Rru_A0347at 419.456 kb on - strand, within Rru_A0347at 419.456 kb on - strand, within Rru_A0347at 419.456 kb on - strand, within Rru_A0347at 419.539 kb on + strand, within Rru_A0347at 419.561 kb on - strand, within Rru_A0347at 419.567 kb on + strand, within Rru_A0347at 419.567 kb on + strand, within Rru_A0347at 419.568 kb on - strand, within Rru_A0347at 419.568 kb on - strand, within Rru_A0347at 419.587 kb on + strand, within Rru_A0347at 419.588 kb on - strand, within Rru_A0347at 419.588 kb on - strand, within Rru_A0347at 419.588 kb on - strand, within Rru_A0347at 419.773 kb on - strand, within Rru_A0347at 419.884 kb on - strandat 420.105 kb on + strand, within Rru_A0348at 420.106 kb on - strand, within Rru_A0348at 420.106 kb on - strand, within Rru_A0348at 420.203 kb on + strand, within Rru_A0348at 420.306 kb on - strandat 420.306 kb on - strandat 420.312 kb on + strandat 420.313 kb on - strandat 420.313 kb on - strandat 420.313 kb on - strandat 420.355 kb on + strandat 420.355 kb on + strandat 420.362 kb on + strandat 420.362 kb on + strandat 420.362 kb on + strandat 420.363 kb on - strandat 420.363 kb on - strandat 420.365 kb on + strandat 420.366 kb on - strandat 420.416 kb on + strandat 420.417 kb on - strandat 420.417 kb on - strandat 420.477 kb on + strandat 420.478 kb on - strandat 420.513 kb on + strandat 420.694 kb on + strandat 420.694 kb on + strandat 420.694 kb on + strandat 420.695 kb on - strandat 420.722 kb on - strandat 420.722 kb on - strandat 420.782 kb on + strandat 420.791 kb on - strandat 420.791 kb on - strandat 420.791 kb on - strandat 420.791 kb on - strandat 420.791 kb on - strandat 420.791 kb on - strandat 420.791 kb on - strandat 420.793 kb on + strandat 420.793 kb on + strandat 420.794 kb on - strandat 420.809 kb on + strandat 420.809 kb on + strandat 420.844 kb on - strandat 420.844 kb on - strandat 420.851 kb on + strandat 420.852 kb on - strandat 420.904 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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418,328 + -0.0
418,328 + -0.3
418,328 + +2.5
418,328 + -1.0
418,341 + -0.0
419,353 + Rru_A0347 0.32 +2.1
419,354 - Rru_A0347 0.32 +1.9
419,355 + Rru_A0347 0.32 -1.6
419,405 + Rru_A0347 0.38 -0.1
419,406 - Rru_A0347 0.38 -0.0
419,406 - Rru_A0347 0.38 +2.2
419,455 + Rru_A0347 0.44 +1.8
419,455 + Rru_A0347 0.44 -0.0
419,455 + Rru_A0347 0.44 -0.0
419,455 + Rru_A0347 0.44 +1.0
419,455 + Rru_A0347 0.44 +1.0
419,455 + Rru_A0347 0.44 +1.5
419,455 + Rru_A0347 0.44 +1.0
419,456 - Rru_A0347 0.44 -0.0
419,456 - Rru_A0347 0.44 -0.0
419,456 - Rru_A0347 0.44 -0.0
419,456 - Rru_A0347 0.44 -0.0
419,539 + Rru_A0347 0.53 -0.0
419,561 - Rru_A0347 0.56 +2.2
419,567 + Rru_A0347 0.56 +1.7
419,567 + Rru_A0347 0.56 -0.0
419,568 - Rru_A0347 0.56 +0.4
419,568 - Rru_A0347 0.56 +1.7
419,587 + Rru_A0347 0.59 +2.4
419,588 - Rru_A0347 0.59 +0.6
419,588 - Rru_A0347 0.59 -0.0
419,588 - Rru_A0347 0.59 +2.1
419,773 - Rru_A0347 0.80 +1.0
419,884 - +1.1
420,105 + Rru_A0348 0.47 +0.6
420,106 - Rru_A0348 0.48 -1.0
420,106 - Rru_A0348 0.48 -0.0
420,203 + Rru_A0348 0.77 -0.0
420,306 - -0.6
420,306 - -0.0
420,312 + +0.5
420,313 - -0.0
420,313 - +3.0
420,313 - -0.5
420,355 + +1.1
420,355 + +1.0
420,362 + +0.2
420,362 + +0.3
420,362 + +2.9
420,363 - +0.5
420,363 - +1.6
420,365 + +1.1
420,366 - -0.0
420,416 + +1.0
420,417 - +0.9
420,417 - +1.3
420,477 + +1.1
420,478 - +1.3
420,513 + -0.0
420,694 + -0.0
420,694 + -0.0
420,694 + +0.5
420,695 - -0.0
420,722 - +2.6
420,722 - +1.0
420,782 + +1.6
420,791 - +1.0
420,791 - -0.0
420,791 - +0.4
420,791 - +0.8
420,791 - +0.2
420,791 - +1.4
420,791 - +0.9
420,793 + +0.8
420,793 + +0.2
420,794 - +1.6
420,809 + -0.0
420,809 + +2.0
420,844 - +3.2
420,844 - +1.2
420,851 + +0.6
420,852 - -0.0
420,904 + -0.0

Or see this region's nucleotide sequence