Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0336 and Rru_A0337 are separated by 157 nucleotides Rru_A0337 and Rru_A0338 are separated by 54 nucleotides Rru_A0338 and Rru_A0339 overlap by 4 nucleotides Rru_A0339 and Rru_A0340 are separated by 787 nucleotides
Rru_A0336: Rru_A0336 - hypothetical protein (NCBI), at 407,932 to 408,774
_A0336
Rru_A0337: Rru_A0337 - Predicted transcriptional regulator (NCBI), at 408,932 to 409,318
_A0337
Rru_A0338: Rru_A0338 - hypothetical protein (NCBI), at 409,373 to 409,699
_A0338
Rru_A0339: Rru_A0339 - Short-chain dehydrogenase/reductase SDR (NCBI), at 409,696 to 410,487
_A0339
Rru_A0340: Rru_A0340 - CRISPR-associated helicase Cas3, core (NCBI), at 411,275 to 413,932
_A0340
Position (kb) 409
410
411 Strain fitness (log2 ratio) -1
0
1
2
3 at 408.773 kb on - strand at 408.925 kb on + strand at 409.029 kb on + strand, within Rru_A0337 at 409.029 kb on + strand, within Rru_A0337 at 409.029 kb on + strand, within Rru_A0337 at 409.029 kb on + strand, within Rru_A0337 at 409.029 kb on + strand, within Rru_A0337 at 409.075 kb on + strand, within Rru_A0337 at 409.076 kb on - strand, within Rru_A0337 at 409.290 kb on + strand at 409.339 kb on + strand at 409.340 kb on - strand at 409.406 kb on + strand, within Rru_A0338 at 409.446 kb on + strand, within Rru_A0338 at 409.446 kb on + strand, within Rru_A0338 at 409.446 kb on + strand, within Rru_A0338 at 409.447 kb on - strand, within Rru_A0338 at 409.547 kb on + strand, within Rru_A0338 at 409.570 kb on + strand, within Rru_A0338 at 409.944 kb on + strand, within Rru_A0339 at 410.109 kb on + strand, within Rru_A0339 at 410.109 kb on + strand, within Rru_A0339 at 410.109 kb on + strand, within Rru_A0339 at 410.109 kb on + strand, within Rru_A0339 at 410.109 kb on + strand, within Rru_A0339 at 410.110 kb on - strand, within Rru_A0339 at 410.110 kb on - strand, within Rru_A0339 at 410.110 kb on - strand, within Rru_A0339 at 410.110 kb on - strand, within Rru_A0339 at 410.110 kb on - strand, within Rru_A0339 at 410.110 kb on - strand, within Rru_A0339 at 410.188 kb on + strand, within Rru_A0339 at 410.188 kb on + strand, within Rru_A0339 at 410.189 kb on - strand, within Rru_A0339 at 410.189 kb on - strand, within Rru_A0339 at 410.258 kb on + strand, within Rru_A0339 at 410.317 kb on + strand, within Rru_A0339 at 410.500 kb on + strand at 410.501 kb on - strand at 410.501 kb on - strand at 410.687 kb on + strand at 410.688 kb on - strand at 410.901 kb on + strand at 410.901 kb on + strand at 410.902 kb on - strand at 410.902 kb on - strand at 410.978 kb on - strand at 411.356 kb on + strand at 411.357 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 408,773 - -0.0 408,925 + +0.7 409,029 + Rru_A0337 0.25 -0.0 409,029 + Rru_A0337 0.25 +1.6 409,029 + Rru_A0337 0.25 -0.0 409,029 + Rru_A0337 0.25 +1.2 409,029 + Rru_A0337 0.25 -0.0 409,075 + Rru_A0337 0.37 -1.0 409,076 - Rru_A0337 0.37 +0.4 409,290 + +0.9 409,339 + -0.0 409,340 - -0.0 409,406 + Rru_A0338 0.10 +1.1 409,446 + Rru_A0338 0.22 +0.5 409,446 + Rru_A0338 0.22 -1.0 409,446 + Rru_A0338 0.22 -0.0 409,447 - Rru_A0338 0.23 +3.2 409,547 + Rru_A0338 0.53 -1.0 409,570 + Rru_A0338 0.60 -0.0 409,944 + Rru_A0339 0.31 +1.2 410,109 + Rru_A0339 0.52 +1.4 410,109 + Rru_A0339 0.52 -0.0 410,109 + Rru_A0339 0.52 -0.0 410,109 + Rru_A0339 0.52 +0.2 410,109 + Rru_A0339 0.52 +0.3 410,110 - Rru_A0339 0.52 +1.8 410,110 - Rru_A0339 0.52 +2.2 410,110 - Rru_A0339 0.52 +0.1 410,110 - Rru_A0339 0.52 -0.4 410,110 - Rru_A0339 0.52 +1.8 410,110 - Rru_A0339 0.52 +1.0 410,188 + Rru_A0339 0.62 -0.0 410,188 + Rru_A0339 0.62 +0.4 410,189 - Rru_A0339 0.62 -0.0 410,189 - Rru_A0339 0.62 -0.0 410,258 + Rru_A0339 0.71 +1.9 410,317 + Rru_A0339 0.78 +0.4 410,500 + +0.9 410,501 - +0.5 410,501 - +1.8 410,687 + +1.4 410,688 - +0.5 410,901 + +1.4 410,901 + -0.2 410,902 - +0.4 410,902 - +1.3 410,978 - -0.0 411,356 + +0.9 411,357 - +1.5
Or see this region's nucleotide sequence