Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0331 and Rru_A0332 are separated by 69 nucleotides Rru_A0332 and Rru_A0333 are separated by 158 nucleotides Rru_A0333 and Rru_A0334 are separated by 475 nucleotides
Rru_A0331: Rru_A0331 - Protein of unknown function DUF6, transmembrane (NCBI), at 403,118 to 404,086
_A0331
Rru_A0332: Rru_A0332 - Glutathione S-transferase-like (NCBI), at 404,156 to 404,845
_A0332
Rru_A0333: Rru_A0333 - Ferritin and Dps (NCBI), at 405,004 to 405,480
_A0333
Rru_A0334: Rru_A0334 - Transcriptional Regulator, LysR family (NCBI), at 405,956 to 406,918
_A0334
Position (kb) 405
406 Strain fitness (log2 ratio) -1
0
1
2
3 at 404.108 kb on + strand at 404.108 kb on + strand at 404.159 kb on + strand at 404.159 kb on + strand at 404.159 kb on + strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.160 kb on - strand at 404.169 kb on - strand at 404.169 kb on - strand at 404.169 kb on - strand at 404.172 kb on - strand at 404.231 kb on + strand, within Rru_A0332 at 404.231 kb on + strand, within Rru_A0332 at 404.231 kb on + strand, within Rru_A0332 at 404.232 kb on - strand, within Rru_A0332 at 404.232 kb on - strand, within Rru_A0332 at 404.232 kb on - strand, within Rru_A0332 at 404.233 kb on + strand, within Rru_A0332 at 404.387 kb on + strand, within Rru_A0332 at 404.388 kb on - strand, within Rru_A0332 at 404.516 kb on + strand, within Rru_A0332 at 404.537 kb on + strand, within Rru_A0332 at 404.552 kb on + strand, within Rru_A0332 at 404.612 kb on + strand, within Rru_A0332 at 404.628 kb on - strand, within Rru_A0332 at 404.797 kb on + strand at 404.797 kb on + strand at 405.019 kb on - strand at 405.019 kb on - strand at 405.222 kb on - strand, within Rru_A0333 at 405.230 kb on + strand, within Rru_A0333 at 405.248 kb on + strand, within Rru_A0333 at 405.305 kb on + strand, within Rru_A0333 at 405.305 kb on + strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.366 kb on - strand, within Rru_A0333 at 405.384 kb on - strand, within Rru_A0333 at 405.390 kb on + strand, within Rru_A0333 at 405.391 kb on - strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.608 kb on - strand at 405.609 kb on + strand at 405.879 kb on + strand at 405.879 kb on + strand at 405.880 kb on - strand at 405.936 kb on - strand at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.319 kb on + strand, within Rru_A0334 at 406.319 kb on + strand, within Rru_A0334 at 406.320 kb on - strand, within Rru_A0334
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 404,108 + -1.0 404,108 + +0.6 404,159 + -0.0 404,159 + -1.0 404,159 + +2.3 404,160 - -1.0 404,160 - +1.8 404,160 - -0.0 404,160 - -0.0 404,160 - +1.2 404,160 - +0.2 404,160 - +1.7 404,169 - -0.0 404,169 - -1.0 404,169 - -0.0 404,172 - -0.0 404,231 + Rru_A0332 0.11 +1.7 404,231 + Rru_A0332 0.11 +0.5 404,231 + Rru_A0332 0.11 -0.0 404,232 - Rru_A0332 0.11 -1.6 404,232 - Rru_A0332 0.11 -0.0 404,232 - Rru_A0332 0.11 -0.0 404,233 + Rru_A0332 0.11 +0.9 404,387 + Rru_A0332 0.33 -0.4 404,388 - Rru_A0332 0.34 -0.5 404,516 + Rru_A0332 0.52 -0.0 404,537 + Rru_A0332 0.55 -0.0 404,552 + Rru_A0332 0.57 +1.3 404,612 + Rru_A0332 0.66 +0.5 404,628 - Rru_A0332 0.68 +1.3 404,797 + +1.8 404,797 + +3.2 405,019 - -0.0 405,019 - +1.6 405,222 - Rru_A0333 0.46 +1.5 405,230 + Rru_A0333 0.47 +1.0 405,248 + Rru_A0333 0.51 +1.3 405,305 + Rru_A0333 0.63 +0.9 405,305 + Rru_A0333 0.63 +0.6 405,306 - Rru_A0333 0.63 +1.4 405,306 - Rru_A0333 0.63 -0.0 405,306 - Rru_A0333 0.63 -0.0 405,306 - Rru_A0333 0.63 +1.1 405,306 - Rru_A0333 0.63 -0.0 405,306 - Rru_A0333 0.63 -0.0 405,366 - Rru_A0333 0.76 -0.0 405,384 - Rru_A0333 0.80 -0.0 405,390 + Rru_A0333 0.81 -0.0 405,391 - Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 +1.0 405,392 + Rru_A0333 0.81 +0.6 405,392 + Rru_A0333 0.81 +1.1 405,392 + Rru_A0333 0.81 +1.3 405,392 + Rru_A0333 0.81 +0.7 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 +1.8 405,392 + Rru_A0333 0.81 +1.0 405,392 + Rru_A0333 0.81 +0.8 405,392 + Rru_A0333 0.81 +2.5 405,392 + Rru_A0333 0.81 +1.3 405,392 + Rru_A0333 0.81 +0.7 405,392 + Rru_A0333 0.81 +1.2 405,392 + Rru_A0333 0.81 +3.2 405,392 + Rru_A0333 0.81 +1.6 405,392 + Rru_A0333 0.81 +0.7 405,392 + Rru_A0333 0.81 -0.0 405,392 + Rru_A0333 0.81 +0.3 405,393 - Rru_A0333 0.82 +2.3 405,393 - Rru_A0333 0.82 +1.6 405,393 - Rru_A0333 0.82 -0.0 405,393 - Rru_A0333 0.82 +1.5 405,393 - Rru_A0333 0.82 +1.3 405,393 - Rru_A0333 0.82 +1.2 405,393 - Rru_A0333 0.82 +1.3 405,608 - +0.3 405,609 + +1.2 405,879 + +0.3 405,879 + +0.3 405,880 - +2.0 405,936 - +1.1 406,280 + Rru_A0334 0.34 -0.0 406,280 + Rru_A0334 0.34 -0.0 406,280 + Rru_A0334 0.34 -0.0 406,280 + Rru_A0334 0.34 -0.0 406,281 - Rru_A0334 0.34 -0.0 406,281 - Rru_A0334 0.34 -0.0 406,281 - Rru_A0334 0.34 -0.0 406,319 + Rru_A0334 0.38 -0.0 406,319 + Rru_A0334 0.38 -0.0 406,320 - Rru_A0334 0.38 -0.0
Or see this region's nucleotide sequence