Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0326

Experiment: Succinic Acid; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0325 and Rru_A0326 are separated by 269 nucleotidesRru_A0326 and Rru_A0327 are separated by 134 nucleotides Rru_A0325: Rru_A0325 - Molybdenum cofactor biosynthesis protein (NCBI), at 394,969 to 395,976 _A0325 Rru_A0326: Rru_A0326 - Transcriptional Regulator, NifA subfamily, Fis Family (NCBI), at 396,246 to 398,447 _A0326 Rru_A0327: Rru_A0327 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 398,582 to 400,444 _A0327 Position (kb) 396 397 398 399Strain fitness (log2 ratio) -1 0 1 2at 395.680 kb on + strand, within Rru_A0325at 395.681 kb on - strand, within Rru_A0325at 395.681 kb on - strand, within Rru_A0325at 395.681 kb on - strand, within Rru_A0325at 395.770 kb on - strand, within Rru_A0325at 395.914 kb on - strandat 395.914 kb on - strandat 395.914 kb on - strandat 395.914 kb on - strandat 395.955 kb on + strandat 396.002 kb on + strandat 396.002 kb on + strandat 396.002 kb on + strandat 396.003 kb on - strandat 396.012 kb on + strandat 396.013 kb on - strandat 396.094 kb on - strandat 396.111 kb on - strandat 396.178 kb on + strandat 396.179 kb on - strandat 396.179 kb on - strandat 396.219 kb on + strandat 396.219 kb on + strandat 396.326 kb on - strandat 396.381 kb on + strandat 396.382 kb on - strandat 396.399 kb on + strandat 396.400 kb on - strandat 396.546 kb on + strand, within Rru_A0326at 396.546 kb on + strand, within Rru_A0326at 396.547 kb on - strand, within Rru_A0326at 396.603 kb on + strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.604 kb on - strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.674 kb on + strand, within Rru_A0326at 396.678 kb on + strand, within Rru_A0326at 396.678 kb on + strand, within Rru_A0326at 396.678 kb on + strand, within Rru_A0326at 396.679 kb on - strand, within Rru_A0326at 396.967 kb on - strand, within Rru_A0326at 397.359 kb on + strand, within Rru_A0326at 397.360 kb on - strand, within Rru_A0326at 397.363 kb on - strand, within Rru_A0326at 397.363 kb on - strand, within Rru_A0326at 397.404 kb on - strand, within Rru_A0326at 397.532 kb on + strand, within Rru_A0326at 397.532 kb on + strand, within Rru_A0326at 397.532 kb on + strand, within Rru_A0326at 397.533 kb on - strand, within Rru_A0326at 397.878 kb on + strand, within Rru_A0326at 397.878 kb on + strand, within Rru_A0326at 397.878 kb on + strand, within Rru_A0326at 397.878 kb on + strand, within Rru_A0326at 397.879 kb on - strand, within Rru_A0326at 397.879 kb on - strand, within Rru_A0326at 397.879 kb on - strand, within Rru_A0326at 397.882 kb on - strand, within Rru_A0326at 397.882 kb on - strand, within Rru_A0326at 397.956 kb on + strand, within Rru_A0326at 397.956 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.024 kb on + strand, within Rru_A0326at 398.025 kb on - strand, within Rru_A0326at 398.025 kb on - strand, within Rru_A0326at 398.034 kb on - strand, within Rru_A0326at 398.034 kb on - strand, within Rru_A0326at 398.314 kb on + strandat 398.315 kb on - strandat 398.315 kb on - strandat 398.501 kb on + strandat 399.022 kb on + strand, within Rru_A0327at 399.046 kb on + strand, within Rru_A0327at 399.047 kb on - strand, within Rru_A0327at 399.068 kb on + strand, within Rru_A0327at 399.068 kb on + strand, within Rru_A0327at 399.068 kb on + strand, within Rru_A0327at 399.069 kb on - strand, within Rru_A0327at 399.108 kb on - strand, within Rru_A0327at 399.435 kb on - strand, within Rru_A0327

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
remove
395,680 + Rru_A0325 0.71 -0.0
395,681 - Rru_A0325 0.71 +0.8
395,681 - Rru_A0325 0.71 +1.1
395,681 - Rru_A0325 0.71 +1.0
395,770 - Rru_A0325 0.79 -0.0
395,914 - +1.0
395,914 - -0.0
395,914 - +0.7
395,914 - +1.2
395,955 + -0.0
396,002 + +0.1
396,002 + -0.3
396,002 + +0.9
396,003 - +1.9
396,012 + +1.0
396,013 - +1.0
396,094 - +0.5
396,111 - +0.3
396,178 + -0.0
396,179 - +1.1
396,179 - -0.0
396,219 + +0.9
396,219 + -0.0
396,326 - -0.0
396,381 + -0.0
396,382 - +1.9
396,399 + +0.9
396,400 - +0.4
396,546 + Rru_A0326 0.14 +0.0
396,546 + Rru_A0326 0.14 +0.3
396,547 - Rru_A0326 0.14 -1.0
396,603 + Rru_A0326 0.16 +1.1
396,604 - Rru_A0326 0.16 +0.0
396,604 - Rru_A0326 0.16 +0.0
396,604 - Rru_A0326 0.16 +1.0
396,604 - Rru_A0326 0.16 +1.2
396,604 - Rru_A0326 0.16 -0.2
396,674 + Rru_A0326 0.19 +0.0
396,674 + Rru_A0326 0.19 +0.0
396,674 + Rru_A0326 0.19 +2.7
396,674 + Rru_A0326 0.19 +2.0
396,674 + Rru_A0326 0.19 +0.0
396,678 + Rru_A0326 0.20 +1.2
396,678 + Rru_A0326 0.20 +1.5
396,678 + Rru_A0326 0.20 +0.5
396,679 - Rru_A0326 0.20 +1.1
396,967 - Rru_A0326 0.33 +0.2
397,359 + Rru_A0326 0.51 -1.0
397,360 - Rru_A0326 0.51 +1.1
397,363 - Rru_A0326 0.51 +0.9
397,363 - Rru_A0326 0.51 +0.0
397,404 - Rru_A0326 0.53 -1.0
397,532 + Rru_A0326 0.58 +1.2
397,532 + Rru_A0326 0.58 +0.9
397,532 + Rru_A0326 0.58 +0.0
397,533 - Rru_A0326 0.58 +1.2
397,878 + Rru_A0326 0.74 +0.0
397,878 + Rru_A0326 0.74 +1.1
397,878 + Rru_A0326 0.74 +0.0
397,878 + Rru_A0326 0.74 +0.3
397,879 - Rru_A0326 0.74 +0.0
397,879 - Rru_A0326 0.74 -1.0
397,879 - Rru_A0326 0.74 +1.6
397,882 - Rru_A0326 0.74 +2.0
397,882 - Rru_A0326 0.74 +1.0
397,956 + Rru_A0326 0.78 +0.5
397,956 + Rru_A0326 0.78 +0.0
398,024 + Rru_A0326 0.81 +0.0
398,024 + Rru_A0326 0.81 +0.0
398,024 + Rru_A0326 0.81 +1.0
398,024 + Rru_A0326 0.81 +0.0
398,024 + Rru_A0326 0.81 -1.6
398,024 + Rru_A0326 0.81 +0.3
398,024 + Rru_A0326 0.81 +0.6
398,024 + Rru_A0326 0.81 +0.6
398,025 - Rru_A0326 0.81 +0.0
398,025 - Rru_A0326 0.81 +0.5
398,034 - Rru_A0326 0.81 +2.6
398,034 - Rru_A0326 0.81 +1.1
398,314 + +1.6
398,315 - +2.0
398,315 - +0.6
398,501 + +0.0
399,022 + Rru_A0327 0.24 +0.0
399,046 + Rru_A0327 0.25 +0.0
399,047 - Rru_A0327 0.25 +0.0
399,068 + Rru_A0327 0.26 +0.7
399,068 + Rru_A0327 0.26 +1.0
399,068 + Rru_A0327 0.26 +2.2
399,069 - Rru_A0327 0.26 +1.3
399,108 - Rru_A0327 0.28 +0.0
399,435 - Rru_A0327 0.46 +1.8

Or see this region's nucleotide sequence