Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0298

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0297 and Rru_A0298 are separated by 136 nucleotidesRru_A0298 and Rru_A0299 are separated by 261 nucleotides Rru_A0297: Rru_A0297 - Putative esterase (NCBI), at 363,503 to 364,531 _A0297 Rru_A0298: Rru_A0298 - Aldehyde dehydrogenase (NAD+) (NCBI), at 364,668 to 366,167 _A0298 Rru_A0299: Rru_A0299 - Glutamine amidotransferase class-I (NCBI), at 366,429 to 367,151 _A0299 Position (kb) 364 365 366 367Strain fitness (log2 ratio) -1 0 1 2 3 4at 363.708 kb on + strand, within Rru_A0297at 363.708 kb on + strand, within Rru_A0297at 363.709 kb on - strand, within Rru_A0297at 363.763 kb on + strand, within Rru_A0297at 363.763 kb on + strand, within Rru_A0297at 363.763 kb on + strand, within Rru_A0297at 363.764 kb on - strand, within Rru_A0297at 363.764 kb on - strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.765 kb on + strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.766 kb on - strand, within Rru_A0297at 363.894 kb on - strand, within Rru_A0297at 363.898 kb on + strand, within Rru_A0297at 363.898 kb on + strand, within Rru_A0297at 363.899 kb on - strand, within Rru_A0297at 363.899 kb on - strand, within Rru_A0297at 363.939 kb on + strand, within Rru_A0297at 363.940 kb on - strand, within Rru_A0297at 364.041 kb on + strand, within Rru_A0297at 364.042 kb on - strand, within Rru_A0297at 364.042 kb on - strand, within Rru_A0297at 364.042 kb on - strand, within Rru_A0297at 364.138 kb on - strand, within Rru_A0297at 364.221 kb on + strand, within Rru_A0297at 364.221 kb on + strand, within Rru_A0297at 364.222 kb on - strand, within Rru_A0297at 364.359 kb on + strand, within Rru_A0297at 364.359 kb on + strand, within Rru_A0297at 364.359 kb on + strand, within Rru_A0297at 364.360 kb on - strand, within Rru_A0297at 364.360 kb on - strand, within Rru_A0297at 364.360 kb on - strand, within Rru_A0297at 364.404 kb on + strand, within Rru_A0297at 364.404 kb on + strand, within Rru_A0297at 364.404 kb on + strand, within Rru_A0297at 364.404 kb on + strand, within Rru_A0297at 364.404 kb on + strand, within Rru_A0297at 364.405 kb on - strand, within Rru_A0297at 364.405 kb on - strand, within Rru_A0297at 364.405 kb on - strand, within Rru_A0297at 364.405 kb on - strand, within Rru_A0297at 364.405 kb on - strand, within Rru_A0297at 364.592 kb on + strandat 364.670 kb on - strandat 364.703 kb on + strandat 364.703 kb on + strandat 364.704 kb on - strandat 364.704 kb on - strandat 364.705 kb on + strandat 364.705 kb on + strandat 364.705 kb on + strandat 364.705 kb on + strandat 364.705 kb on + strandat 364.771 kb on - strandat 364.778 kb on + strandat 364.793 kb on - strandat 364.804 kb on + strandat 364.804 kb on + strandat 364.805 kb on - strandat 364.805 kb on - strandat 364.866 kb on + strand, within Rru_A0298at 364.886 kb on - strand, within Rru_A0298at 365.020 kb on + strand, within Rru_A0298at 365.020 kb on + strand, within Rru_A0298at 365.021 kb on - strand, within Rru_A0298at 365.021 kb on - strand, within Rru_A0298at 365.096 kb on + strand, within Rru_A0298at 365.098 kb on + strand, within Rru_A0298at 365.098 kb on + strand, within Rru_A0298at 365.276 kb on + strand, within Rru_A0298at 365.277 kb on - strand, within Rru_A0298at 365.401 kb on + strand, within Rru_A0298at 365.402 kb on - strand, within Rru_A0298at 365.402 kb on - strand, within Rru_A0298at 365.749 kb on + strand, within Rru_A0298at 365.749 kb on + strand, within Rru_A0298at 365.749 kb on + strand, within Rru_A0298at 365.749 kb on + strand, within Rru_A0298at 365.750 kb on - strand, within Rru_A0298at 365.750 kb on - strand, within Rru_A0298at 365.773 kb on + strand, within Rru_A0298at 365.774 kb on - strand, within Rru_A0298at 365.774 kb on - strand, within Rru_A0298at 366.441 kb on - strandat 366.441 kb on - strandat 366.492 kb on + strandat 366.493 kb on - strandat 366.633 kb on - strand, within Rru_A0299at 366.951 kb on + strand, within Rru_A0299at 366.952 kb on - strand, within Rru_A0299at 367.149 kb on + strandat 367.150 kb on - strandat 367.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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363,708 + Rru_A0297 0.20 -0.0
363,708 + Rru_A0297 0.20 +0.4
363,709 - Rru_A0297 0.20 -0.0
363,763 + Rru_A0297 0.25 +0.8
363,763 + Rru_A0297 0.25 -0.0
363,763 + Rru_A0297 0.25 +0.8
363,764 - Rru_A0297 0.25 +1.1
363,764 - Rru_A0297 0.25 +2.2
363,765 + Rru_A0297 0.25 +1.1
363,765 + Rru_A0297 0.25 -0.0
363,765 + Rru_A0297 0.25 +0.4
363,765 + Rru_A0297 0.25 -0.0
363,765 + Rru_A0297 0.25 -0.2
363,765 + Rru_A0297 0.25 -0.0
363,765 + Rru_A0297 0.25 +1.6
363,765 + Rru_A0297 0.25 -0.0
363,766 - Rru_A0297 0.26 +1.3
363,766 - Rru_A0297 0.26 +0.7
363,766 - Rru_A0297 0.26 +0.2
363,766 - Rru_A0297 0.26 +1.7
363,766 - Rru_A0297 0.26 +1.2
363,766 - Rru_A0297 0.26 +1.2
363,766 - Rru_A0297 0.26 +2.2
363,766 - Rru_A0297 0.26 -0.0
363,766 - Rru_A0297 0.26 +1.2
363,766 - Rru_A0297 0.26 +0.5
363,894 - Rru_A0297 0.38 +0.6
363,898 + Rru_A0297 0.38 +1.0
363,898 + Rru_A0297 0.38 +2.2
363,899 - Rru_A0297 0.38 -0.0
363,899 - Rru_A0297 0.38 +1.6
363,939 + Rru_A0297 0.42 +1.1
363,940 - Rru_A0297 0.42 +1.2
364,041 + Rru_A0297 0.52 +1.1
364,042 - Rru_A0297 0.52 +1.0
364,042 - Rru_A0297 0.52 +0.7
364,042 - Rru_A0297 0.52 +0.2
364,138 - Rru_A0297 0.62 -0.0
364,221 + Rru_A0297 0.70 +1.8
364,221 + Rru_A0297 0.70 -0.0
364,222 - Rru_A0297 0.70 -0.2
364,359 + Rru_A0297 0.83 +1.1
364,359 + Rru_A0297 0.83 -0.2
364,359 + Rru_A0297 0.83 -0.0
364,360 - Rru_A0297 0.83 +1.1
364,360 - Rru_A0297 0.83 -0.0
364,360 - Rru_A0297 0.83 +3.0
364,404 + Rru_A0297 0.88 -0.0
364,404 + Rru_A0297 0.88 -1.0
364,404 + Rru_A0297 0.88 +0.8
364,404 + Rru_A0297 0.88 -0.0
364,404 + Rru_A0297 0.88 -0.0
364,405 - Rru_A0297 0.88 +0.6
364,405 - Rru_A0297 0.88 -0.0
364,405 - Rru_A0297 0.88 +1.4
364,405 - Rru_A0297 0.88 -0.0
364,405 - Rru_A0297 0.88 -1.0
364,592 + -0.0
364,670 - +1.6
364,703 + +1.0
364,703 + +0.8
364,704 - +1.1
364,704 - -0.0
364,705 + +2.1
364,705 + -0.0
364,705 + +1.1
364,705 + -0.2
364,705 + -0.0
364,771 - +1.0
364,778 + +2.2
364,793 - +1.9
364,804 + +0.7
364,804 + -0.0
364,805 - +0.5
364,805 - +0.9
364,866 + Rru_A0298 0.13 -0.0
364,886 - Rru_A0298 0.15 -0.0
365,020 + Rru_A0298 0.23 +2.0
365,020 + Rru_A0298 0.23 +0.2
365,021 - Rru_A0298 0.24 +0.8
365,021 - Rru_A0298 0.24 -0.0
365,096 + Rru_A0298 0.29 -0.4
365,098 + Rru_A0298 0.29 +1.7
365,098 + Rru_A0298 0.29 +0.4
365,276 + Rru_A0298 0.41 +1.0
365,277 - Rru_A0298 0.41 +0.6
365,401 + Rru_A0298 0.49 -0.0
365,402 - Rru_A0298 0.49 +0.8
365,402 - Rru_A0298 0.49 +0.7
365,749 + Rru_A0298 0.72 +0.9
365,749 + Rru_A0298 0.72 +0.6
365,749 + Rru_A0298 0.72 -0.0
365,749 + Rru_A0298 0.72 +1.1
365,750 - Rru_A0298 0.72 +0.4
365,750 - Rru_A0298 0.72 +2.3
365,773 + Rru_A0298 0.74 +2.3
365,774 - Rru_A0298 0.74 +0.5
365,774 - Rru_A0298 0.74 +1.5
366,441 - -0.0
366,441 - -0.1
366,492 + +1.7
366,493 - -0.6
366,633 - Rru_A0299 0.28 -0.0
366,951 + Rru_A0299 0.72 -0.0
366,952 - Rru_A0299 0.72 -0.0
367,149 + -0.0
367,150 - +3.8
367,150 - -1.0

Or see this region's nucleotide sequence