Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0290 and Rru_A0291 are separated by 118 nucleotides Rru_A0291 and Rru_A0292 are separated by 145 nucleotides Rru_A0292 and Rru_A0293 are separated by 201 nucleotides
Rru_A0290: Rru_A0290 - Auxin Efflux Carrier (NCBI), at 356,090 to 356,974
_A0290
Rru_A0291: Rru_A0291 - hypothetical protein (NCBI), at 357,093 to 357,428
_A0291
Rru_A0292: Rru_A0292 - Integration host factor, beta subunit (NCBI), at 357,574 to 357,876
_A0292
Rru_A0293: Rru_A0293 - Ribosomal protein S1 (NCBI), at 358,078 to 359,799
_A0293
Position (kb) 357
358 Strain fitness (log2 ratio) -1
0
1
2
3 at 356.393 kb on - strand, within Rru_A0290 at 356.632 kb on + strand, within Rru_A0290 at 356.633 kb on - strand, within Rru_A0290 at 356.633 kb on - strand, within Rru_A0290 at 356.710 kb on - strand, within Rru_A0290 at 356.765 kb on + strand, within Rru_A0290 at 356.765 kb on + strand, within Rru_A0290 at 356.765 kb on + strand, within Rru_A0290 at 356.765 kb on + strand, within Rru_A0290 at 356.766 kb on - strand, within Rru_A0290 at 356.852 kb on + strand, within Rru_A0290 at 356.852 kb on + strand, within Rru_A0290 at 356.853 kb on - strand, within Rru_A0290 at 356.853 kb on - strand, within Rru_A0290 at 356.871 kb on - strand, within Rru_A0290 at 356.968 kb on + strand at 356.968 kb on + strand at 356.969 kb on - strand at 357.149 kb on - strand, within Rru_A0291 at 357.223 kb on + strand, within Rru_A0291 at 357.223 kb on + strand, within Rru_A0291 at 357.967 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 356,393 - Rru_A0290 0.34 +0.7 356,632 + Rru_A0290 0.61 +1.6 356,633 - Rru_A0290 0.61 -0.0 356,633 - Rru_A0290 0.61 +1.5 356,710 - Rru_A0290 0.70 +1.1 356,765 + Rru_A0290 0.76 +1.7 356,765 + Rru_A0290 0.76 +0.4 356,765 + Rru_A0290 0.76 -1.0 356,765 + Rru_A0290 0.76 +3.2 356,766 - Rru_A0290 0.76 +0.3 356,852 + Rru_A0290 0.86 -0.0 356,852 + Rru_A0290 0.86 -1.0 356,853 - Rru_A0290 0.86 +1.2 356,853 - Rru_A0290 0.86 +0.8 356,871 - Rru_A0290 0.88 +1.3 356,968 + -1.6 356,968 + -0.0 356,969 - +2.7 357,149 - Rru_A0291 0.17 -0.0 357,223 + Rru_A0291 0.39 -0.0 357,223 + Rru_A0291 0.39 -0.0 357,967 + -0.0
Or see this region's nucleotide sequence