Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0274 and Rru_A0275 are separated by 200 nucleotides Rru_A0275 and Rru_A0276 are separated by 364 nucleotides
Rru_A0274: Rru_A0274 - Acetyl-CoA C-acetyltransferase (NCBI), at 338,303 to 339,475
_A0274
Rru_A0275: Rru_A0275 - Alpha/beta hydrolase fold (NCBI), at 339,676 to 340,920
_A0275
Rru_A0276: Rru_A0276 - Polyhydroxyalkanoate synthesis repressor PhaR (NCBI), at 341,285 to 341,890
_A0276
Position (kb) 339
340
341 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 339.099 kb on + strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.100 kb on - strand, within Rru_A0274 at 339.231 kb on + strand, within Rru_A0274 at 339.413 kb on + strand at 339.414 kb on - strand at 339.424 kb on + strand at 339.443 kb on - strand at 339.443 kb on - strand at 339.720 kb on - strand at 339.944 kb on + strand, within Rru_A0275 at 340.158 kb on + strand, within Rru_A0275 at 340.307 kb on + strand, within Rru_A0275 at 340.383 kb on - strand, within Rru_A0275 at 340.383 kb on - strand, within Rru_A0275 at 340.565 kb on + strand, within Rru_A0275 at 340.566 kb on - strand, within Rru_A0275 at 340.628 kb on + strand, within Rru_A0275 at 340.629 kb on - strand, within Rru_A0275 at 340.629 kb on - strand, within Rru_A0275 at 340.643 kb on + strand, within Rru_A0275 at 340.644 kb on - strand, within Rru_A0275 at 340.644 kb on - strand, within Rru_A0275 at 340.644 kb on - strand, within Rru_A0275 at 340.644 kb on - strand, within Rru_A0275 at 340.644 kb on - strand, within Rru_A0275 at 340.738 kb on - strand, within Rru_A0275 at 341.043 kb on + strand at 341.043 kb on + strand at 341.043 kb on + strand at 341.043 kb on + strand at 341.044 kb on - strand at 341.113 kb on + strand at 341.119 kb on - strand at 341.195 kb on + strand at 341.195 kb on + strand at 341.195 kb on + strand at 341.195 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 339,099 + Rru_A0274 0.68 +1.2 339,100 - Rru_A0274 0.68 -0.0 339,100 - Rru_A0274 0.68 -0.0 339,100 - Rru_A0274 0.68 +1.5 339,100 - Rru_A0274 0.68 -0.4 339,231 + Rru_A0274 0.79 +1.6 339,413 + -0.0 339,414 - +1.0 339,424 + +1.1 339,443 - -0.0 339,443 - +1.4 339,720 - -0.0 339,944 + Rru_A0275 0.22 -1.0 340,158 + Rru_A0275 0.39 -0.0 340,307 + Rru_A0275 0.51 +4.5 340,383 - Rru_A0275 0.57 +2.4 340,383 - Rru_A0275 0.57 -0.0 340,565 + Rru_A0275 0.71 -0.0 340,566 - Rru_A0275 0.71 +1.0 340,628 + Rru_A0275 0.76 -0.0 340,629 - Rru_A0275 0.77 +2.1 340,629 - Rru_A0275 0.77 -0.0 340,643 + Rru_A0275 0.78 +1.8 340,644 - Rru_A0275 0.78 +2.0 340,644 - Rru_A0275 0.78 +2.2 340,644 - Rru_A0275 0.78 +2.3 340,644 - Rru_A0275 0.78 -1.0 340,644 - Rru_A0275 0.78 +1.4 340,738 - Rru_A0275 0.85 -0.0 341,043 + +1.3 341,043 + +1.4 341,043 + +3.7 341,043 + -0.0 341,044 - -0.0 341,113 + -1.0 341,119 - +0.8 341,195 + -0.0 341,195 + -0.0 341,195 + +0.4 341,195 + +2.0 341,201 + +1.0 341,201 + +0.8 341,201 + +0.6 341,237 + -0.0
Or see this region's nucleotide sequence