Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0253

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0252 and Rru_A0253 are separated by 301 nucleotidesRru_A0253 and Rru_A0254 overlap by 8 nucleotides Rru_A0252: Rru_A0252 - Zinc-containing alcohol dehydrogenase superfamily (NCBI), at 313,535 to 314,578 _A0252 Rru_A0253: Rru_A0253 - GDP-mannose 4,6-dehydratase (NCBI), at 314,880 to 315,950 _A0253 Rru_A0254: Rru_A0254 - NAD-dependent epimerase/dehydratase (NCBI), at 315,943 to 316,932 _A0254 Position (kb) 314 315 316Strain fitness (log2 ratio) -1 0 1 2 3 4at 314.100 kb on + strand, within Rru_A0252at 314.100 kb on + strand, within Rru_A0252at 314.100 kb on + strand, within Rru_A0252at 314.166 kb on + strand, within Rru_A0252at 314.167 kb on - strand, within Rru_A0252at 314.167 kb on - strand, within Rru_A0252at 314.214 kb on + strand, within Rru_A0252at 314.214 kb on + strand, within Rru_A0252at 314.215 kb on - strand, within Rru_A0252at 314.256 kb on + strand, within Rru_A0252at 314.256 kb on + strand, within Rru_A0252at 314.256 kb on + strand, within Rru_A0252at 314.257 kb on - strand, within Rru_A0252at 314.257 kb on - strand, within Rru_A0252at 314.360 kb on + strand, within Rru_A0252at 314.361 kb on - strand, within Rru_A0252at 314.436 kb on + strand, within Rru_A0252at 314.436 kb on + strand, within Rru_A0252at 314.436 kb on + strand, within Rru_A0252at 314.436 kb on + strand, within Rru_A0252at 314.519 kb on - strandat 314.672 kb on - strandat 314.679 kb on - strandat 314.900 kb on + strandat 314.900 kb on + strandat 314.901 kb on - strandat 314.901 kb on - strandat 314.901 kb on - strandat 314.901 kb on - strandat 314.903 kb on + strandat 314.932 kb on - strandat 314.932 kb on - strandat 314.961 kb on + strandat 314.962 kb on - strandat 315.024 kb on + strand, within Rru_A0253at 315.024 kb on + strand, within Rru_A0253at 315.132 kb on + strand, within Rru_A0253at 315.133 kb on - strand, within Rru_A0253at 315.133 kb on - strand, within Rru_A0253at 315.133 kb on - strand, within Rru_A0253at 315.134 kb on + strand, within Rru_A0253at 315.134 kb on + strand, within Rru_A0253at 315.134 kb on + strand, within Rru_A0253at 315.134 kb on + strand, within Rru_A0253at 315.135 kb on - strand, within Rru_A0253at 315.135 kb on - strand, within Rru_A0253at 315.184 kb on - strand, within Rru_A0253at 315.267 kb on + strand, within Rru_A0253at 315.291 kb on + strand, within Rru_A0253at 315.351 kb on + strand, within Rru_A0253at 315.369 kb on + strand, within Rru_A0253at 315.370 kb on - strand, within Rru_A0253at 315.375 kb on + strand, within Rru_A0253at 315.376 kb on - strand, within Rru_A0253at 315.376 kb on - strand, within Rru_A0253at 315.394 kb on - strand, within Rru_A0253at 315.531 kb on + strand, within Rru_A0253at 315.532 kb on - strand, within Rru_A0253at 315.532 kb on - strand, within Rru_A0253at 315.532 kb on - strand, within Rru_A0253at 315.532 kb on - strand, within Rru_A0253at 315.579 kb on + strand, within Rru_A0253at 315.580 kb on - strand, within Rru_A0253at 315.627 kb on + strand, within Rru_A0253at 315.627 kb on + strand, within Rru_A0253at 315.627 kb on + strand, within Rru_A0253at 315.627 kb on + strand, within Rru_A0253at 315.627 kb on + strand, within Rru_A0253at 315.628 kb on - strand, within Rru_A0253at 315.628 kb on - strand, within Rru_A0253at 315.628 kb on - strand, within Rru_A0253at 315.628 kb on - strand, within Rru_A0253at 315.628 kb on - strand, within Rru_A0253at 315.628 kb on - strand, within Rru_A0253at 315.628 kb on - strand, within Rru_A0253at 315.783 kb on + strand, within Rru_A0253at 315.784 kb on - strand, within Rru_A0253at 315.784 kb on - strand, within Rru_A0253at 315.784 kb on - strand, within Rru_A0253at 316.115 kb on + strand, within Rru_A0254at 316.116 kb on - strand, within Rru_A0254at 316.116 kb on - strand, within Rru_A0254at 316.260 kb on + strand, within Rru_A0254at 316.261 kb on - strand, within Rru_A0254at 316.261 kb on - strand, within Rru_A0254at 316.261 kb on - strand, within Rru_A0254at 316.261 kb on - strand, within Rru_A0254at 316.261 kb on - strand, within Rru_A0254at 316.325 kb on - strand, within Rru_A0254at 316.399 kb on + strand, within Rru_A0254at 316.400 kb on - strand, within Rru_A0254at 316.454 kb on - strand, within Rru_A0254at 316.465 kb on + strand, within Rru_A0254at 316.465 kb on + strand, within Rru_A0254at 316.466 kb on - strand, within Rru_A0254at 316.466 kb on - strand, within Rru_A0254at 316.466 kb on - strand, within Rru_A0254at 316.466 kb on - strand, within Rru_A0254at 316.466 kb on - strand, within Rru_A0254at 316.630 kb on + strand, within Rru_A0254at 316.630 kb on + strand, within Rru_A0254at 316.630 kb on + strand, within Rru_A0254at 316.630 kb on + strand, within Rru_A0254at 316.630 kb on + strand, within Rru_A0254at 316.630 kb on + strand, within Rru_A0254at 316.631 kb on - strand, within Rru_A0254at 316.762 kb on + strand, within Rru_A0254at 316.813 kb on - strand, within Rru_A0254at 316.813 kb on - strand, within Rru_A0254at 316.813 kb on - strand, within Rru_A0254at 316.891 kb on + strandat 316.891 kb on + strandat 316.891 kb on + strandat 316.891 kb on + strandat 316.891 kb on + strandat 316.892 kb on - strandat 316.892 kb on - strandat 316.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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314,100 + Rru_A0252 0.54 -0.0
314,100 + Rru_A0252 0.54 +1.0
314,100 + Rru_A0252 0.54 -0.0
314,166 + Rru_A0252 0.60 +2.5
314,167 - Rru_A0252 0.61 +1.1
314,167 - Rru_A0252 0.61 +1.2
314,214 + Rru_A0252 0.65 +1.1
314,214 + Rru_A0252 0.65 +0.1
314,215 - Rru_A0252 0.65 -0.0
314,256 + Rru_A0252 0.69 +1.0
314,256 + Rru_A0252 0.69 +0.3
314,256 + Rru_A0252 0.69 -0.0
314,257 - Rru_A0252 0.69 +1.3
314,257 - Rru_A0252 0.69 +2.1
314,360 + Rru_A0252 0.79 +1.2
314,361 - Rru_A0252 0.79 -0.0
314,436 + Rru_A0252 0.86 -0.0
314,436 + Rru_A0252 0.86 -0.0
314,436 + Rru_A0252 0.86 +2.7
314,436 + Rru_A0252 0.86 -0.0
314,519 - +1.0
314,672 - -0.4
314,679 - +1.1
314,900 + -0.0
314,900 + +1.1
314,901 - -0.2
314,901 - +2.1
314,901 - +3.2
314,901 - +0.6
314,903 + +2.1
314,932 - -0.0
314,932 - -0.0
314,961 + +0.9
314,962 - +1.3
315,024 + Rru_A0253 0.13 +0.9
315,024 + Rru_A0253 0.13 +1.1
315,132 + Rru_A0253 0.24 +1.4
315,133 - Rru_A0253 0.24 +1.0
315,133 - Rru_A0253 0.24 -0.0
315,133 - Rru_A0253 0.24 +0.8
315,134 + Rru_A0253 0.24 +1.1
315,134 + Rru_A0253 0.24 +0.5
315,134 + Rru_A0253 0.24 +1.1
315,134 + Rru_A0253 0.24 +0.7
315,135 - Rru_A0253 0.24 -0.0
315,135 - Rru_A0253 0.24 +0.5
315,184 - Rru_A0253 0.28 +0.7
315,267 + Rru_A0253 0.36 -0.0
315,291 + Rru_A0253 0.38 +2.5
315,351 + Rru_A0253 0.44 -0.0
315,369 + Rru_A0253 0.46 -1.0
315,370 - Rru_A0253 0.46 +2.3
315,375 + Rru_A0253 0.46 +0.7
315,376 - Rru_A0253 0.46 +0.9
315,376 - Rru_A0253 0.46 +0.6
315,394 - Rru_A0253 0.48 -0.0
315,531 + Rru_A0253 0.61 -0.0
315,532 - Rru_A0253 0.61 -0.0
315,532 - Rru_A0253 0.61 +0.9
315,532 - Rru_A0253 0.61 +1.1
315,532 - Rru_A0253 0.61 -0.0
315,579 + Rru_A0253 0.65 +1.2
315,580 - Rru_A0253 0.65 -0.0
315,627 + Rru_A0253 0.70 -0.0
315,627 + Rru_A0253 0.70 +4.1
315,627 + Rru_A0253 0.70 +1.1
315,627 + Rru_A0253 0.70 -0.0
315,627 + Rru_A0253 0.70 +0.7
315,628 - Rru_A0253 0.70 +1.7
315,628 - Rru_A0253 0.70 -0.0
315,628 - Rru_A0253 0.70 +0.3
315,628 - Rru_A0253 0.70 +2.0
315,628 - Rru_A0253 0.70 +1.0
315,628 - Rru_A0253 0.70 +0.8
315,628 - Rru_A0253 0.70 -1.0
315,783 + Rru_A0253 0.84 +2.1
315,784 - Rru_A0253 0.84 +0.7
315,784 - Rru_A0253 0.84 -0.0
315,784 - Rru_A0253 0.84 -0.0
316,115 + Rru_A0254 0.17 -0.1
316,116 - Rru_A0254 0.17 +1.9
316,116 - Rru_A0254 0.17 -0.0
316,260 + Rru_A0254 0.32 -0.0
316,261 - Rru_A0254 0.32 -0.0
316,261 - Rru_A0254 0.32 -0.0
316,261 - Rru_A0254 0.32 +1.1
316,261 - Rru_A0254 0.32 -0.0
316,261 - Rru_A0254 0.32 +1.1
316,325 - Rru_A0254 0.39 -0.0
316,399 + Rru_A0254 0.46 +0.9
316,400 - Rru_A0254 0.46 -0.0
316,454 - Rru_A0254 0.52 -0.2
316,465 + Rru_A0254 0.53 +0.1
316,465 + Rru_A0254 0.53 +0.7
316,466 - Rru_A0254 0.53 +1.1
316,466 - Rru_A0254 0.53 +1.0
316,466 - Rru_A0254 0.53 +0.4
316,466 - Rru_A0254 0.53 +0.9
316,466 - Rru_A0254 0.53 +0.6
316,630 + Rru_A0254 0.69 +0.8
316,630 + Rru_A0254 0.69 -0.0
316,630 + Rru_A0254 0.69 +0.2
316,630 + Rru_A0254 0.69 +0.6
316,630 + Rru_A0254 0.69 -0.7
316,630 + Rru_A0254 0.69 -0.0
316,631 - Rru_A0254 0.69 +0.8
316,762 + Rru_A0254 0.83 -0.0
316,813 - Rru_A0254 0.88 +0.8
316,813 - Rru_A0254 0.88 -0.2
316,813 - Rru_A0254 0.88 -0.0
316,891 + +0.6
316,891 + +0.9
316,891 + -0.0
316,891 + +0.6
316,891 + +1.0
316,892 - -0.0
316,892 - -0.6
316,930 + -0.8

Or see this region's nucleotide sequence