Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0252

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0251 and Rru_A0252 are separated by 161 nucleotidesRru_A0252 and Rru_A0253 are separated by 301 nucleotides Rru_A0251: Rru_A0251 - Transcriptional Regulator, AraC family (NCBI), at 312,444 to 313,373 _A0251 Rru_A0252: Rru_A0252 - Zinc-containing alcohol dehydrogenase superfamily (NCBI), at 313,535 to 314,578 _A0252 Rru_A0253: Rru_A0253 - GDP-mannose 4,6-dehydratase (NCBI), at 314,880 to 315,950 _A0253 Position (kb) 313 314 315Strain fitness (log2 ratio) -1 0 1 2 3at 312.541 kb on + strand, within Rru_A0251at 312.541 kb on + strand, within Rru_A0251at 312.541 kb on + strand, within Rru_A0251at 312.541 kb on + strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.542 kb on - strand, within Rru_A0251at 312.592 kb on + strand, within Rru_A0251at 312.592 kb on + strand, within Rru_A0251at 312.593 kb on - strand, within Rru_A0251at 312.593 kb on - strand, within Rru_A0251at 312.646 kb on + strand, within Rru_A0251at 312.646 kb on + strand, within Rru_A0251at 312.647 kb on - strand, within Rru_A0251at 312.647 kb on - strand, within Rru_A0251at 312.647 kb on - strand, within Rru_A0251at 312.647 kb on - strand, within Rru_A0251at 312.667 kb on + strand, within Rru_A0251at 312.668 kb on - strand, within Rru_A0251at 312.776 kb on - strand, within Rru_A0251at 312.776 kb on - strand, within Rru_A0251at 312.800 kb on + strand, within Rru_A0251at 312.800 kb on + strand, within Rru_A0251at 312.800 kb on + strand, within Rru_A0251at 312.801 kb on - strand, within Rru_A0251at 312.832 kb on + strand, within Rru_A0251at 312.832 kb on + strand, within Rru_A0251at 312.832 kb on + strand, within Rru_A0251at 312.833 kb on - strand, within Rru_A0251at 312.833 kb on - strand, within Rru_A0251at 313.129 kb on + strand, within Rru_A0251at 313.210 kb on + strand, within Rru_A0251at 313.210 kb on + strand, within Rru_A0251at 313.210 kb on + strand, within Rru_A0251at 313.211 kb on - strand, within Rru_A0251at 313.222 kb on + strand, within Rru_A0251at 313.223 kb on - strand, within Rru_A0251at 313.223 kb on - strand, within Rru_A0251at 313.261 kb on + strand, within Rru_A0251at 313.261 kb on + strand, within Rru_A0251at 313.273 kb on + strand, within Rru_A0251at 313.312 kb on + strandat 313.312 kb on + strandat 313.313 kb on - strandat 313.475 kb on - strandat 313.742 kb on + strand, within Rru_A0252at 313.742 kb on + strand, within Rru_A0252at 313.742 kb on + strand, within Rru_A0252at 313.742 kb on + strand, within Rru_A0252at 313.742 kb on + strand, within Rru_A0252at 313.743 kb on - strand, within Rru_A0252at 313.743 kb on - strand, within Rru_A0252at 313.743 kb on - strand, within Rru_A0252at 313.743 kb on - strand, within Rru_A0252at 314.100 kb on + strand, within Rru_A0252at 314.100 kb on + strand, within Rru_A0252at 314.100 kb on + strand, within Rru_A0252at 314.166 kb on + strand, within Rru_A0252at 314.167 kb on - strand, within Rru_A0252at 314.167 kb on - strand, within Rru_A0252at 314.214 kb on + strand, within Rru_A0252at 314.214 kb on + strand, within Rru_A0252at 314.215 kb on - strand, within Rru_A0252at 314.256 kb on + strand, within Rru_A0252at 314.256 kb on + strand, within Rru_A0252at 314.256 kb on + strand, within Rru_A0252at 314.257 kb on - strand, within Rru_A0252at 314.257 kb on - strand, within Rru_A0252at 314.360 kb on + strand, within Rru_A0252at 314.361 kb on - strand, within Rru_A0252at 314.436 kb on + strand, within Rru_A0252at 314.436 kb on + strand, within Rru_A0252at 314.436 kb on + strand, within Rru_A0252at 314.436 kb on + strand, within Rru_A0252at 314.519 kb on - strandat 314.672 kb on - strandat 314.679 kb on - strandat 314.900 kb on + strandat 314.900 kb on + strandat 314.901 kb on - strandat 314.901 kb on - strandat 314.901 kb on - strandat 314.901 kb on - strandat 314.903 kb on + strandat 314.932 kb on - strandat 314.932 kb on - strandat 314.961 kb on + strandat 314.962 kb on - strandat 315.024 kb on + strand, within Rru_A0253at 315.024 kb on + strand, within Rru_A0253at 315.132 kb on + strand, within Rru_A0253at 315.133 kb on - strand, within Rru_A0253at 315.133 kb on - strand, within Rru_A0253at 315.133 kb on - strand, within Rru_A0253at 315.134 kb on + strand, within Rru_A0253at 315.134 kb on + strand, within Rru_A0253at 315.134 kb on + strand, within Rru_A0253at 315.134 kb on + strand, within Rru_A0253at 315.135 kb on - strand, within Rru_A0253at 315.135 kb on - strand, within Rru_A0253at 315.184 kb on - strand, within Rru_A0253at 315.267 kb on + strand, within Rru_A0253at 315.291 kb on + strand, within Rru_A0253at 315.351 kb on + strand, within Rru_A0253at 315.369 kb on + strand, within Rru_A0253at 315.370 kb on - strand, within Rru_A0253at 315.375 kb on + strand, within Rru_A0253at 315.376 kb on - strand, within Rru_A0253at 315.376 kb on - strand, within Rru_A0253at 315.394 kb on - strand, within Rru_A0253at 315.531 kb on + strand, within Rru_A0253at 315.532 kb on - strand, within Rru_A0253at 315.532 kb on - strand, within Rru_A0253at 315.532 kb on - strand, within Rru_A0253at 315.532 kb on - strand, within Rru_A0253

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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312,541 + Rru_A0251 0.10 +1.6
312,541 + Rru_A0251 0.10 +1.8
312,541 + Rru_A0251 0.10 +1.5
312,541 + Rru_A0251 0.10 +1.1
312,542 - Rru_A0251 0.11 +0.4
312,542 - Rru_A0251 0.11 -0.0
312,542 - Rru_A0251 0.11 +1.0
312,542 - Rru_A0251 0.11 -0.0
312,542 - Rru_A0251 0.11 +1.1
312,592 + Rru_A0251 0.16 -0.0
312,592 + Rru_A0251 0.16 -0.0
312,593 - Rru_A0251 0.16 +1.2
312,593 - Rru_A0251 0.16 -1.0
312,646 + Rru_A0251 0.22 +2.6
312,646 + Rru_A0251 0.22 +1.6
312,647 - Rru_A0251 0.22 -0.0
312,647 - Rru_A0251 0.22 -0.0
312,647 - Rru_A0251 0.22 -0.0
312,647 - Rru_A0251 0.22 -1.0
312,667 + Rru_A0251 0.24 +0.4
312,668 - Rru_A0251 0.24 -0.0
312,776 - Rru_A0251 0.36 -0.0
312,776 - Rru_A0251 0.36 -1.0
312,800 + Rru_A0251 0.38 +2.3
312,800 + Rru_A0251 0.38 +2.4
312,800 + Rru_A0251 0.38 +0.4
312,801 - Rru_A0251 0.38 +0.8
312,832 + Rru_A0251 0.42 +0.2
312,832 + Rru_A0251 0.42 -0.0
312,832 + Rru_A0251 0.42 -0.0
312,833 - Rru_A0251 0.42 -0.0
312,833 - Rru_A0251 0.42 -0.0
313,129 + Rru_A0251 0.74 +1.5
313,210 + Rru_A0251 0.82 -0.0
313,210 + Rru_A0251 0.82 +0.5
313,210 + Rru_A0251 0.82 +0.7
313,211 - Rru_A0251 0.82 -1.0
313,222 + Rru_A0251 0.84 -1.0
313,223 - Rru_A0251 0.84 -0.4
313,223 - Rru_A0251 0.84 -0.0
313,261 + Rru_A0251 0.88 +0.9
313,261 + Rru_A0251 0.88 -0.0
313,273 + Rru_A0251 0.89 -0.0
313,312 + -0.0
313,312 + -1.0
313,313 - -0.0
313,475 - +0.4
313,742 + Rru_A0252 0.20 +1.8
313,742 + Rru_A0252 0.20 -0.0
313,742 + Rru_A0252 0.20 +1.8
313,742 + Rru_A0252 0.20 -0.0
313,742 + Rru_A0252 0.20 +1.1
313,743 - Rru_A0252 0.20 +0.9
313,743 - Rru_A0252 0.20 -1.0
313,743 - Rru_A0252 0.20 -0.0
313,743 - Rru_A0252 0.20 +0.5
314,100 + Rru_A0252 0.54 -0.0
314,100 + Rru_A0252 0.54 +1.0
314,100 + Rru_A0252 0.54 -0.0
314,166 + Rru_A0252 0.60 +2.5
314,167 - Rru_A0252 0.61 +1.1
314,167 - Rru_A0252 0.61 +1.2
314,214 + Rru_A0252 0.65 +1.1
314,214 + Rru_A0252 0.65 +0.1
314,215 - Rru_A0252 0.65 -0.0
314,256 + Rru_A0252 0.69 +1.0
314,256 + Rru_A0252 0.69 +0.3
314,256 + Rru_A0252 0.69 -0.0
314,257 - Rru_A0252 0.69 +1.3
314,257 - Rru_A0252 0.69 +2.1
314,360 + Rru_A0252 0.79 +1.2
314,361 - Rru_A0252 0.79 -0.0
314,436 + Rru_A0252 0.86 -0.0
314,436 + Rru_A0252 0.86 -0.0
314,436 + Rru_A0252 0.86 +2.7
314,436 + Rru_A0252 0.86 -0.0
314,519 - +1.0
314,672 - -0.4
314,679 - +1.1
314,900 + -0.0
314,900 + +1.1
314,901 - -0.2
314,901 - +2.1
314,901 - +3.2
314,901 - +0.6
314,903 + +2.1
314,932 - -0.0
314,932 - -0.0
314,961 + +0.9
314,962 - +1.3
315,024 + Rru_A0253 0.13 +0.9
315,024 + Rru_A0253 0.13 +1.1
315,132 + Rru_A0253 0.24 +1.4
315,133 - Rru_A0253 0.24 +1.0
315,133 - Rru_A0253 0.24 -0.0
315,133 - Rru_A0253 0.24 +0.8
315,134 + Rru_A0253 0.24 +1.1
315,134 + Rru_A0253 0.24 +0.5
315,134 + Rru_A0253 0.24 +1.1
315,134 + Rru_A0253 0.24 +0.7
315,135 - Rru_A0253 0.24 -0.0
315,135 - Rru_A0253 0.24 +0.5
315,184 - Rru_A0253 0.28 +0.7
315,267 + Rru_A0253 0.36 -0.0
315,291 + Rru_A0253 0.38 +2.5
315,351 + Rru_A0253 0.44 -0.0
315,369 + Rru_A0253 0.46 -1.0
315,370 - Rru_A0253 0.46 +2.3
315,375 + Rru_A0253 0.46 +0.7
315,376 - Rru_A0253 0.46 +0.9
315,376 - Rru_A0253 0.46 +0.6
315,394 - Rru_A0253 0.48 -0.0
315,531 + Rru_A0253 0.61 -0.0
315,532 - Rru_A0253 0.61 -0.0
315,532 - Rru_A0253 0.61 +0.9
315,532 - Rru_A0253 0.61 +1.1
315,532 - Rru_A0253 0.61 -0.0

Or see this region's nucleotide sequence