Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0242 and Rru_A0243 are separated by 375 nucleotides Rru_A0243 and Rru_A0244 are separated by 191 nucleotides
Rru_A0242: Rru_A0242 - Type III restriction enzyme, res subunit (NCBI), at 298,055 to 301,099
_A0242
Rru_A0243: Rru_A0243 - tRNA/rRNA cytosine-C5-methylase (NCBI), at 301,475 to 302,839
_A0243
Rru_A0244: Rru_A0244 - IMP dehydrogenase (NCBI), at 303,031 to 304,494
_A0244
Position (kb) 301
302
303 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 300.598 kb on + strand, within Rru_A0242 at 300.598 kb on + strand, within Rru_A0242 at 300.598 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.701 kb on + strand, within Rru_A0242 at 300.702 kb on - strand, within Rru_A0242 at 300.861 kb on + strand at 300.862 kb on - strand at 301.057 kb on - strand at 301.066 kb on + strand at 301.066 kb on + strand at 301.066 kb on + strand at 301.066 kb on + strand at 301.117 kb on + strand at 301.117 kb on + strand at 301.117 kb on + strand at 301.117 kb on + strand at 301.118 kb on - strand at 301.138 kb on + strand at 301.138 kb on + strand at 301.139 kb on - strand at 301.185 kb on + strand at 301.186 kb on - strand at 301.208 kb on + strand at 301.220 kb on + strand at 301.220 kb on + strand at 301.220 kb on + strand at 301.220 kb on + strand at 301.221 kb on - strand at 301.221 kb on - strand at 301.364 kb on - strand at 301.364 kb on - strand at 301.364 kb on - strand at 301.406 kb on + strand at 301.407 kb on - strand at 301.407 kb on - strand at 301.407 kb on - strand at 301.417 kb on + strand at 301.417 kb on + strand at 301.418 kb on - strand at 301.418 kb on - strand at 301.477 kb on - strand at 301.672 kb on - strand, within Rru_A0243 at 301.744 kb on - strand, within Rru_A0243 at 301.744 kb on - strand, within Rru_A0243 at 301.939 kb on + strand, within Rru_A0243 at 301.976 kb on - strand, within Rru_A0243 at 302.033 kb on - strand, within Rru_A0243 at 302.471 kb on + strand, within Rru_A0243 at 302.471 kb on + strand, within Rru_A0243 at 303.021 kb on + strand at 303.027 kb on + strand at 303.027 kb on + strand at 303.027 kb on + strand at 303.028 kb on - strand at 303.028 kb on - strand at 303.028 kb on - strand at 303.028 kb on - strand at 303.028 kb on - strand at 303.032 kb on + strand at 303.032 kb on + strand at 303.032 kb on + strand at 303.033 kb on - strand at 303.033 kb on - strand at 303.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 300,598 + Rru_A0242 0.84 -0.0 300,598 + Rru_A0242 0.84 +0.8 300,598 + Rru_A0242 0.84 +0.8 300,701 + Rru_A0242 0.87 +0.8 300,701 + Rru_A0242 0.87 -0.0 300,701 + Rru_A0242 0.87 -0.0 300,701 + Rru_A0242 0.87 -0.0 300,701 + Rru_A0242 0.87 +1.1 300,701 + Rru_A0242 0.87 +1.1 300,702 - Rru_A0242 0.87 +1.1 300,861 + +1.7 300,862 - -0.2 301,057 - -0.0 301,066 + -0.6 301,066 + -0.0 301,066 + +1.4 301,066 + -0.0 301,117 + -0.4 301,117 + -0.0 301,117 + +1.0 301,117 + -0.0 301,118 - -0.0 301,138 + +1.0 301,138 + +0.8 301,139 - +0.5 301,185 + +1.6 301,186 - +0.6 301,208 + +3.0 301,220 + +1.5 301,220 + -0.0 301,220 + +0.7 301,220 + +1.0 301,221 - -0.1 301,221 - +1.4 301,364 - +3.6 301,364 - +0.9 301,364 - -1.2 301,406 + +0.8 301,407 - +0.8 301,407 - +0.8 301,407 - +0.8 301,417 + -2.0 301,417 + -0.0 301,418 - -0.0 301,418 - -0.0 301,477 - -0.0 301,672 - Rru_A0243 0.14 +0.3 301,744 - Rru_A0243 0.20 +0.8 301,744 - Rru_A0243 0.20 +0.9 301,939 + Rru_A0243 0.34 +1.4 301,976 - Rru_A0243 0.37 +1.1 302,033 - Rru_A0243 0.41 +0.9 302,471 + Rru_A0243 0.73 -0.0 302,471 + Rru_A0243 0.73 +0.8 303,021 + -1.0 303,027 + +1.7 303,027 + +2.0 303,027 + +1.3 303,028 - +1.2 303,028 - +3.3 303,028 - -0.0 303,028 - -0.0 303,028 - -1.0 303,032 + +1.6 303,032 + +0.9 303,032 + +1.8 303,033 - +0.5 303,033 - +1.0 303,033 - -0.0
Or see this region's nucleotide sequence