Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0202 and Rru_A0203 are separated by 239 nucleotides Rru_A0203 and Rru_A0204 are separated by 249 nucleotides Rru_A0204 and Rru_A0205 are separated by 188 nucleotides
Rru_A0202: Rru_A0202 - Phospholipase D/Transphosphatidylase (NCBI), at 250,648 to 253,059
_A0202
Rru_A0203: Rru_A0203 - hypothetical protein (NCBI), at 253,299 to 253,607
_A0203
Rru_A0204: Rru_A0204 - BolA-like protein (NCBI), at 253,857 to 254,201
_A0204
Rru_A0205: Rru_A0205 - Heat shock protein DnaJ-like (NCBI), at 254,390 to 255,001
_A0205
Position (kb) 253
254 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 252.729 kb on + strand, within Rru_A0202 at 252.729 kb on + strand, within Rru_A0202 at 252.729 kb on + strand, within Rru_A0202 at 252.729 kb on + strand, within Rru_A0202 at 252.730 kb on - strand, within Rru_A0202 at 252.730 kb on - strand, within Rru_A0202 at 252.920 kb on + strand at 252.920 kb on + strand at 252.921 kb on - strand at 252.921 kb on - strand at 252.921 kb on - strand at 253.118 kb on + strand at 253.118 kb on + strand at 253.518 kb on + strand, within Rru_A0203 at 253.598 kb on + strand at 253.598 kb on + strand at 253.669 kb on - strand at 253.704 kb on - strand at 253.726 kb on + strand at 253.726 kb on + strand at 254.363 kb on + strand at 254.364 kb on - strand at 254.364 kb on - strand at 254.366 kb on + strand at 254.366 kb on + strand at 254.366 kb on + strand at 254.367 kb on - strand at 254.367 kb on - strand at 254.367 kb on - strand at 254.367 kb on - strand at 254.546 kb on + strand, within Rru_A0205 at 254.547 kb on - strand, within Rru_A0205 at 254.547 kb on - strand, within Rru_A0205 at 254.547 kb on - strand, within Rru_A0205 at 254.549 kb on + strand, within Rru_A0205 at 254.549 kb on + strand, within Rru_A0205 at 254.549 kb on + strand, within Rru_A0205 at 254.550 kb on - strand, within Rru_A0205 at 254.550 kb on - strand, within Rru_A0205 at 254.579 kb on + strand, within Rru_A0205 at 254.579 kb on + strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.580 kb on - strand, within Rru_A0205 at 254.582 kb on - strand, within Rru_A0205 at 254.582 kb on - strand, within Rru_A0205 at 254.597 kb on + strand, within Rru_A0205 at 254.598 kb on - strand, within Rru_A0205 at 254.598 kb on - strand, within Rru_A0205 at 254.601 kb on - strand, within Rru_A0205
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 252,729 + Rru_A0202 0.86 +0.4 252,729 + Rru_A0202 0.86 -0.0 252,729 + Rru_A0202 0.86 +1.9 252,729 + Rru_A0202 0.86 +3.8 252,730 - Rru_A0202 0.86 +1.0 252,730 - Rru_A0202 0.86 +0.6 252,920 + +1.9 252,920 + +1.0 252,921 - +2.2 252,921 - +1.0 252,921 - +1.5 253,118 + +1.4 253,118 + -0.0 253,518 + Rru_A0203 0.71 -1.0 253,598 + +0.4 253,598 + -0.0 253,669 - +1.1 253,704 - +0.9 253,726 + -0.0 253,726 + +1.2 254,363 + +1.0 254,364 - -0.0 254,364 - -0.0 254,366 + +0.2 254,366 + -0.0 254,366 + -0.0 254,367 - +2.6 254,367 - -0.0 254,367 - -0.0 254,367 - -0.0 254,546 + Rru_A0205 0.25 -1.6 254,547 - Rru_A0205 0.26 -0.0 254,547 - Rru_A0205 0.26 +1.0 254,547 - Rru_A0205 0.26 +1.6 254,549 + Rru_A0205 0.26 -0.0 254,549 + Rru_A0205 0.26 +1.9 254,549 + Rru_A0205 0.26 -0.0 254,550 - Rru_A0205 0.26 -1.0 254,550 - Rru_A0205 0.26 +0.8 254,579 + Rru_A0205 0.31 -0.0 254,579 + Rru_A0205 0.31 -0.3 254,580 - Rru_A0205 0.31 +1.5 254,580 - Rru_A0205 0.31 +1.2 254,580 - Rru_A0205 0.31 +0.4 254,580 - Rru_A0205 0.31 +1.0 254,580 - Rru_A0205 0.31 -0.0 254,582 - Rru_A0205 0.31 +1.2 254,582 - Rru_A0205 0.31 -0.0 254,597 + Rru_A0205 0.34 -0.0 254,598 - Rru_A0205 0.34 +1.3 254,598 - Rru_A0205 0.34 -0.0 254,601 - Rru_A0205 0.34 +2.0
Or see this region's nucleotide sequence