Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0200

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0198 and Rru_A0199 overlap by 27 nucleotidesRru_A0199 and Rru_A0200 are separated by 167 nucleotidesRru_A0200 and Rru_A0201 are separated by 179 nucleotidesRru_A0201 and Rru_A0202 overlap by 4 nucleotides Rru_A0198: Rru_A0198 - hypothetical protein (NCBI), at 246,145 to 248,130 _A0198 Rru_A0199: Rru_A0199 - hypothetical protein (NCBI), at 248,104 to 248,298 _A0199 Rru_A0200: Rru_A0200 - Restriction endonuclease (NCBI), at 248,466 to 249,677 _A0200 Rru_A0201: Rru_A0201 - Endonuclease/exonuclease/phosphatase (NCBI), at 249,857 to 250,651 _A0201 Rru_A0202: Rru_A0202 - Phospholipase D/Transphosphatidylase (NCBI), at 250,648 to 253,059 _A0202 Position (kb) 248 249 250Strain fitness (log2 ratio) -1 0 1 2 3at 247.727 kb on + strand, within Rru_A0198at 247.836 kb on + strand, within Rru_A0198at 247.837 kb on - strand, within Rru_A0198at 247.859 kb on + strand, within Rru_A0198at 248.128 kb on + strandat 248.128 kb on + strandat 248.235 kb on + strand, within Rru_A0199at 248.235 kb on + strand, within Rru_A0199at 248.235 kb on + strand, within Rru_A0199at 248.236 kb on - strand, within Rru_A0199at 248.332 kb on + strandat 248.332 kb on + strandat 248.333 kb on - strandat 248.333 kb on - strandat 248.333 kb on - strandat 248.333 kb on - strandat 248.372 kb on + strandat 248.373 kb on - strandat 248.416 kb on + strandat 248.416 kb on + strandat 248.421 kb on - strandat 248.614 kb on - strand, within Rru_A0200at 248.682 kb on - strand, within Rru_A0200at 248.695 kb on + strand, within Rru_A0200at 248.696 kb on - strand, within Rru_A0200at 248.737 kb on + strand, within Rru_A0200at 248.789 kb on + strand, within Rru_A0200at 248.789 kb on + strand, within Rru_A0200at 248.789 kb on + strand, within Rru_A0200at 248.789 kb on + strand, within Rru_A0200at 248.789 kb on + strand, within Rru_A0200at 248.790 kb on - strand, within Rru_A0200at 248.790 kb on - strand, within Rru_A0200at 248.793 kb on + strand, within Rru_A0200at 248.835 kb on + strand, within Rru_A0200at 248.855 kb on - strand, within Rru_A0200at 248.867 kb on - strand, within Rru_A0200at 248.977 kb on + strand, within Rru_A0200at 248.996 kb on + strand, within Rru_A0200at 248.997 kb on - strand, within Rru_A0200at 248.997 kb on - strand, within Rru_A0200at 248.997 kb on - strand, within Rru_A0200at 249.073 kb on + strand, within Rru_A0200at 249.074 kb on - strand, within Rru_A0200at 249.074 kb on - strand, within Rru_A0200at 249.074 kb on - strand, within Rru_A0200at 249.118 kb on + strand, within Rru_A0200at 249.118 kb on + strand, within Rru_A0200at 249.118 kb on + strand, within Rru_A0200at 249.119 kb on - strand, within Rru_A0200at 249.119 kb on - strand, within Rru_A0200at 249.122 kb on + strand, within Rru_A0200at 249.122 kb on + strand, within Rru_A0200at 249.123 kb on - strand, within Rru_A0200at 249.123 kb on - strand, within Rru_A0200at 249.123 kb on - strand, within Rru_A0200at 249.201 kb on + strand, within Rru_A0200at 249.202 kb on - strand, within Rru_A0200at 249.205 kb on + strand, within Rru_A0200at 249.206 kb on - strand, within Rru_A0200at 249.257 kb on + strand, within Rru_A0200at 249.258 kb on - strand, within Rru_A0200at 249.258 kb on - strand, within Rru_A0200at 249.305 kb on + strand, within Rru_A0200at 249.306 kb on - strand, within Rru_A0200at 249.385 kb on + strand, within Rru_A0200at 249.390 kb on + strand, within Rru_A0200at 249.454 kb on - strand, within Rru_A0200at 249.454 kb on - strand, within Rru_A0200at 249.529 kb on + strand, within Rru_A0200at 249.530 kb on - strand, within Rru_A0200at 249.536 kb on + strand, within Rru_A0200at 249.717 kb on - strandat 249.773 kb on - strandat 250.292 kb on + strand, within Rru_A0201at 250.292 kb on + strand, within Rru_A0201at 250.293 kb on - strand, within Rru_A0201at 250.293 kb on - strand, within Rru_A0201at 250.472 kb on + strand, within Rru_A0201at 250.472 kb on + strand, within Rru_A0201at 250.472 kb on + strand, within Rru_A0201at 250.473 kb on - strand, within Rru_A0201at 250.473 kb on - strand, within Rru_A0201

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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247,727 + Rru_A0198 0.80 +0.8
247,836 + Rru_A0198 0.85 +1.5
247,837 - Rru_A0198 0.85 +1.5
247,859 + Rru_A0198 0.86 +0.2
248,128 + +0.5
248,128 + +0.5
248,235 + Rru_A0199 0.67 -0.0
248,235 + Rru_A0199 0.67 +0.8
248,235 + Rru_A0199 0.67 +2.2
248,236 - Rru_A0199 0.68 +1.8
248,332 + -0.0
248,332 + +0.9
248,333 - -0.0
248,333 - +1.0
248,333 - +2.6
248,333 - -0.0
248,372 + +1.1
248,373 - +1.8
248,416 + +0.5
248,416 + -0.0
248,421 - -0.0
248,614 - Rru_A0200 0.12 +1.5
248,682 - Rru_A0200 0.18 +1.0
248,695 + Rru_A0200 0.19 +0.7
248,696 - Rru_A0200 0.19 -0.4
248,737 + Rru_A0200 0.22 +2.0
248,789 + Rru_A0200 0.27 +0.8
248,789 + Rru_A0200 0.27 +2.0
248,789 + Rru_A0200 0.27 -0.0
248,789 + Rru_A0200 0.27 -1.0
248,789 + Rru_A0200 0.27 -0.0
248,790 - Rru_A0200 0.27 +1.8
248,790 - Rru_A0200 0.27 +2.6
248,793 + Rru_A0200 0.27 -0.0
248,835 + Rru_A0200 0.30 +1.2
248,855 - Rru_A0200 0.32 -0.0
248,867 - Rru_A0200 0.33 +1.4
248,977 + Rru_A0200 0.42 -0.0
248,996 + Rru_A0200 0.44 +1.2
248,997 - Rru_A0200 0.44 +1.7
248,997 - Rru_A0200 0.44 +3.6
248,997 - Rru_A0200 0.44 -0.0
249,073 + Rru_A0200 0.50 +1.7
249,074 - Rru_A0200 0.50 +1.3
249,074 - Rru_A0200 0.50 -0.0
249,074 - Rru_A0200 0.50 +1.0
249,118 + Rru_A0200 0.54 -0.0
249,118 + Rru_A0200 0.54 +2.3
249,118 + Rru_A0200 0.54 -0.0
249,119 - Rru_A0200 0.54 +3.2
249,119 - Rru_A0200 0.54 +1.3
249,122 + Rru_A0200 0.54 +1.8
249,122 + Rru_A0200 0.54 +0.8
249,123 - Rru_A0200 0.54 +0.5
249,123 - Rru_A0200 0.54 +1.3
249,123 - Rru_A0200 0.54 -0.0
249,201 + Rru_A0200 0.61 -0.0
249,202 - Rru_A0200 0.61 +1.1
249,205 + Rru_A0200 0.61 +1.3
249,206 - Rru_A0200 0.61 -0.0
249,257 + Rru_A0200 0.65 +1.6
249,258 - Rru_A0200 0.65 -0.0
249,258 - Rru_A0200 0.65 +2.4
249,305 + Rru_A0200 0.69 -0.0
249,306 - Rru_A0200 0.69 -0.0
249,385 + Rru_A0200 0.76 +2.2
249,390 + Rru_A0200 0.76 +1.0
249,454 - Rru_A0200 0.82 +1.3
249,454 - Rru_A0200 0.82 -1.0
249,529 + Rru_A0200 0.88 +1.2
249,530 - Rru_A0200 0.88 +0.8
249,536 + Rru_A0200 0.88 -0.0
249,717 - +1.1
249,773 - -0.0
250,292 + Rru_A0201 0.55 -0.0
250,292 + Rru_A0201 0.55 +1.3
250,293 - Rru_A0201 0.55 +1.2
250,293 - Rru_A0201 0.55 -0.0
250,472 + Rru_A0201 0.77 -0.0
250,472 + Rru_A0201 0.77 -0.0
250,472 + Rru_A0201 0.77 +1.4
250,473 - Rru_A0201 0.77 +1.0
250,473 - Rru_A0201 0.77 -1.6

Or see this region's nucleotide sequence