Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0184 and Rru_A0185 overlap by 4 nucleotides Rru_A0185 and Rru_A0186 overlap by 4 nucleotides
Rru_A0184: Rru_A0184 - Protein of unknown function DUF324 (NCBI), at 220,433 to 222,079
_A0184
Rru_A0185: Rru_A0185 - hypothetical protein (NCBI), at 222,076 to 224,034
_A0185
Rru_A0186: Rru_A0186 - hypothetical protein (NCBI), at 224,031 to 225,704
_A0186
Position (kb) 222
223
224
225 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 221.231 kb on + strand, within Rru_A0184 at 221.231 kb on + strand, within Rru_A0184 at 221.232 kb on - strand, within Rru_A0184 at 221.607 kb on + strand, within Rru_A0184 at 221.607 kb on + strand, within Rru_A0184 at 221.607 kb on + strand, within Rru_A0184 at 221.608 kb on - strand, within Rru_A0184 at 221.841 kb on + strand, within Rru_A0184 at 221.841 kb on + strand, within Rru_A0184 at 221.842 kb on - strand, within Rru_A0184 at 222.104 kb on - strand at 222.104 kb on - strand at 222.104 kb on - strand at 222.272 kb on - strand, within Rru_A0185 at 222.299 kb on + strand, within Rru_A0185 at 222.398 kb on + strand, within Rru_A0185 at 222.398 kb on + strand, within Rru_A0185 at 222.398 kb on + strand, within Rru_A0185 at 222.399 kb on - strand, within Rru_A0185 at 222.399 kb on - strand, within Rru_A0185 at 222.402 kb on + strand, within Rru_A0185 at 222.402 kb on + strand, within Rru_A0185 at 222.402 kb on + strand, within Rru_A0185 at 222.402 kb on + strand, within Rru_A0185 at 222.402 kb on + strand, within Rru_A0185 at 222.402 kb on + strand, within Rru_A0185 at 222.402 kb on + strand, within Rru_A0185 at 222.402 kb on + strand, within Rru_A0185 at 222.652 kb on + strand, within Rru_A0185 at 222.906 kb on + strand, within Rru_A0185 at 223.276 kb on + strand, within Rru_A0185 at 223.276 kb on + strand, within Rru_A0185 at 223.277 kb on - strand, within Rru_A0185 at 223.357 kb on + strand, within Rru_A0185 at 224.071 kb on + strand at 224.072 kb on - strand at 224.211 kb on + strand, within Rru_A0186 at 224.212 kb on - strand, within Rru_A0186 at 224.253 kb on - strand, within Rru_A0186 at 224.253 kb on - strand, within Rru_A0186 at 224.330 kb on + strand, within Rru_A0186 at 224.330 kb on + strand, within Rru_A0186 at 224.330 kb on + strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.331 kb on - strand, within Rru_A0186 at 224.465 kb on - strand, within Rru_A0186 at 224.478 kb on + strand, within Rru_A0186 at 224.478 kb on + strand, within Rru_A0186 at 224.479 kb on - strand, within Rru_A0186 at 224.479 kb on - strand, within Rru_A0186 at 224.571 kb on + strand, within Rru_A0186 at 224.571 kb on + strand, within Rru_A0186 at 224.857 kb on - strand, within Rru_A0186 at 224.946 kb on - strand, within Rru_A0186 at 224.980 kb on + strand, within Rru_A0186 at 225.032 kb on + strand, within Rru_A0186
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 221,231 + Rru_A0184 0.48 +3.0 221,231 + Rru_A0184 0.48 +2.3 221,232 - Rru_A0184 0.49 +1.6 221,607 + Rru_A0184 0.71 -0.0 221,607 + Rru_A0184 0.71 +1.0 221,607 + Rru_A0184 0.71 +1.8 221,608 - Rru_A0184 0.71 +0.8 221,841 + Rru_A0184 0.85 -0.0 221,841 + Rru_A0184 0.85 -0.0 221,842 - Rru_A0184 0.86 -0.0 222,104 - -0.0 222,104 - -0.0 222,104 - +0.3 222,272 - Rru_A0185 0.10 -0.0 222,299 + Rru_A0185 0.11 -0.0 222,398 + Rru_A0185 0.16 -0.0 222,398 + Rru_A0185 0.16 +0.3 222,398 + Rru_A0185 0.16 +3.2 222,399 - Rru_A0185 0.16 +0.8 222,399 - Rru_A0185 0.16 +3.4 222,402 + Rru_A0185 0.17 +0.9 222,402 + Rru_A0185 0.17 -0.0 222,402 + Rru_A0185 0.17 +0.9 222,402 + Rru_A0185 0.17 -0.0 222,402 + Rru_A0185 0.17 +2.2 222,402 + Rru_A0185 0.17 +0.8 222,402 + Rru_A0185 0.17 +1.1 222,402 + Rru_A0185 0.17 -0.0 222,652 + Rru_A0185 0.29 +2.4 222,906 + Rru_A0185 0.42 -0.4 223,276 + Rru_A0185 0.61 +3.1 223,276 + Rru_A0185 0.61 -0.0 223,277 - Rru_A0185 0.61 +0.4 223,357 + Rru_A0185 0.65 +2.6 224,071 + +1.0 224,072 - +1.0 224,211 + Rru_A0186 0.11 +1.0 224,212 - Rru_A0186 0.11 -0.0 224,253 - Rru_A0186 0.13 +1.0 224,253 - Rru_A0186 0.13 +1.2 224,330 + Rru_A0186 0.18 +1.8 224,330 + Rru_A0186 0.18 -0.5 224,330 + Rru_A0186 0.18 -0.0 224,331 - Rru_A0186 0.18 +3.3 224,331 - Rru_A0186 0.18 -0.0 224,331 - Rru_A0186 0.18 +0.4 224,331 - Rru_A0186 0.18 +2.2 224,331 - Rru_A0186 0.18 -0.0 224,465 - Rru_A0186 0.26 -0.0 224,478 + Rru_A0186 0.27 +0.3 224,478 + Rru_A0186 0.27 +1.2 224,479 - Rru_A0186 0.27 -1.0 224,479 - Rru_A0186 0.27 +4.4 224,571 + Rru_A0186 0.32 +0.9 224,571 + Rru_A0186 0.32 -0.0 224,857 - Rru_A0186 0.49 -0.0 224,946 - Rru_A0186 0.55 +0.3 224,980 + Rru_A0186 0.57 +0.5 225,032 + Rru_A0186 0.60 +1.1
Or see this region's nucleotide sequence