Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0179

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0177 and Rru_A0178 are separated by 222 nucleotidesRru_A0178 and Rru_A0179 are separated by 16 nucleotidesRru_A0179 and 11438598 are separated by 261 nucleotides11438598 and 11580961 overlap by 41 nucleotides11580961 and 11723353 overlap by 41 nucleotides11723353 and 11438599 are separated by 0 nucleotides11438599 and 11580962 overlap by 34 nucleotides11580962 and 11723354 overlap by 34 nucleotides11723354 and 11438600 are separated by 0 nucleotides11438600 and 11580963 overlap by 41 nucleotides11580963 and 11723355 overlap by 41 nucleotides11723355 and 11438601 are separated by 0 nucleotides11438601 and 11580964 overlap by 37 nucleotides11580964 and 11723356 overlap by 37 nucleotides11723356 and 11438602 are separated by 0 nucleotides11438602 and 11580965 overlap by 37 nucleotides11580965 and 11723357 overlap by 37 nucleotides11723357 and 11438603 are separated by 0 nucleotides11438603 and 11580966 overlap by 35 nucleotides11580966 and 11723358 overlap by 35 nucleotides11723358 and 11438604 are separated by 0 nucleotides11438604 and 11580967 overlap by 37 nucleotides11580967 and 11723359 overlap by 37 nucleotides11723359 and 11438605 are separated by 0 nucleotides11438605 and 11580968 overlap by 53 nucleotides11580968 and 11723360 overlap by 53 nucleotides11723360 and 11438606 are separated by 0 nucleotides11438606 and 11580969 overlap by 37 nucleotides11580969 and 11723361 overlap by 37 nucleotides11723361 and 11438607 are separated by 0 nucleotides11438607 and 11580970 overlap by 40 nucleotides11580970 and 11723362 overlap by 40 nucleotides11723362 and 11438608 are separated by 0 nucleotides11438608 and 11580971 overlap by 37 nucleotides11580971 and 11723363 overlap by 37 nucleotides11723363 and 11438609 are separated by 0 nucleotides11438609 and 11580972 overlap by 37 nucleotides11580972 and 11723364 overlap by 37 nucleotides11723364 and 11438610 are separated by 0 nucleotides11438610 and 11580973 overlap by 37 nucleotides11580973 and 11723365 overlap by 37 nucleotides11723365 and 11438611 are separated by 0 nucleotides11438611 and 11580974 overlap by 37 nucleotides11580974 and 11723366 overlap by 37 nucleotides11723366 and 11438612 are separated by 0 nucleotides11438612 and 11580975 overlap by 37 nucleotides11580975 and 11723367 overlap by 37 nucleotides11723367 and Rru_A0180 are separated by 129 nucleotides Rru_A0177: Rru_A0177 - Lytic transglycosylase, catalytic (NCBI), at 210,683 to 211,045 _A0177 Rru_A0178: Rru_A0178 - CRISPR-associated protein Cas2, putative (NCBI), at 211,268 to 211,576 _A0178 Rru_A0179: Rru_A0179 - Protein of unknown function DUF83 (NCBI), at 211,593 to 213,335 _A0179 11438598 - no description, at 213,597 to 213,637 11438598 11580961 - no description, at 213,597 to 213,637 11580961 11723353 - no description, at 213,597 to 213,637 11723353 11438599 - no description, at 213,638 to 213,671 11438599 11580962 - no description, at 213,638 to 213,671 11580962 11723354 - no description, at 213,638 to 213,671 11723354 11438600 - no description, at 213,672 to 213,712 11438600 11580963 - no description, at 213,672 to 213,712 11580963 11723355 - no description, at 213,672 to 213,712 11723355 11438601 - no description, at 213,713 to 213,749 11438601 11580964 - no description, at 213,713 to 213,749 11580964 11723356 - no description, at 213,713 to 213,749 11723356 11438602 - no description, at 213,750 to 213,786 11438602 11580965 - no description, at 213,750 to 213,786 11580965 11723357 - no description, at 213,750 to 213,786 11723357 11438603 - no description, at 213,787 to 213,821 11438603 11580966 - no description, at 213,787 to 213,821 11580966 11723358 - no description, at 213,787 to 213,821 11723358 11438604 - no description, at 213,822 to 213,858 11438604 11580967 - no description, at 213,822 to 213,858 11580967 11723359 - no description, at 213,822 to 213,858 11723359 11438605 - no description, at 213,859 to 213,911 11438605 11580968 - no description, at 213,859 to 213,911 11580968 11723360 - no description, at 213,859 to 213,911 11723360 11438606 - no description, at 213,912 to 213,948 11438606 11580969 - no description, at 213,912 to 213,948 11580969 11723361 - no description, at 213,912 to 213,948 11723361 11438607 - no description, at 213,949 to 213,988 11438607 11580970 - no description, at 213,949 to 213,988 11580970 11723362 - no description, at 213,949 to 213,988 11723362 11438608 - no description, at 213,989 to 214,025 11438608 11580971 - no description, at 213,989 to 214,025 11580971 11723363 - no description, at 213,989 to 214,025 11723363 11438609 - no description, at 214,026 to 214,062 11438609 11580972 - no description, at 214,026 to 214,062 11580972 11723364 - no description, at 214,026 to 214,062 11723364 11438610 - no description, at 214,063 to 214,099 11438610 11580973 - no description, at 214,063 to 214,099 11580973 11723365 - no description, at 214,063 to 214,099 11723365 11438611 - no description, at 214,100 to 214,136 11438611 11580974 - no description, at 214,100 to 214,136 11580974 11723366 - no description, at 214,100 to 214,136 11723366 11438612 - no description, at 214,137 to 214,173 11438612 11580975 - no description, at 214,137 to 214,173 11580975 11723367 - no description, at 214,137 to 214,173 11723367 Rru_A0180: Rru_A0180 - hypothetical protein (NCBI), at 214,303 to 215,160 _A0180 Position (kb) 211 212 213 214Strain fitness (log2 ratio) -1 0 1 2at 210.684 kb on + strandat 210.684 kb on + strandat 210.684 kb on + strandat 210.711 kb on + strandat 210.711 kb on + strandat 210.711 kb on + strandat 211.040 kb on - strandat 211.040 kb on - strandat 211.164 kb on + strandat 211.164 kb on + strandat 211.164 kb on + strandat 211.164 kb on + strandat 211.358 kb on + strand, within Rru_A0178at 211.358 kb on + strand, within Rru_A0178at 211.359 kb on - strand, within Rru_A0178at 211.359 kb on - strand, within Rru_A0178at 211.359 kb on - strand, within Rru_A0178at 211.359 kb on - strand, within Rru_A0178at 211.359 kb on - strand, within Rru_A0178at 211.530 kb on + strand, within Rru_A0178at 211.530 kb on + strand, within Rru_A0178at 211.530 kb on + strand, within Rru_A0178at 211.531 kb on - strand, within Rru_A0178at 211.531 kb on - strand, within Rru_A0178at 211.542 kb on + strand, within Rru_A0178at 211.542 kb on + strand, within Rru_A0178at 211.543 kb on - strand, within Rru_A0178at 211.606 kb on + strandat 211.606 kb on + strandat 211.606 kb on + strandat 211.606 kb on + strandat 211.607 kb on - strandat 211.607 kb on - strandat 211.738 kb on + strandat 211.739 kb on - strandat 211.795 kb on + strand, within Rru_A0179at 211.796 kb on - strand, within Rru_A0179at 211.796 kb on - strand, within Rru_A0179at 211.830 kb on + strand, within Rru_A0179at 211.831 kb on - strand, within Rru_A0179at 211.924 kb on + strand, within Rru_A0179at 211.924 kb on + strand, within Rru_A0179at 211.924 kb on + strand, within Rru_A0179at 211.925 kb on - strand, within Rru_A0179at 211.925 kb on - strand, within Rru_A0179at 211.971 kb on + strand, within Rru_A0179at 211.993 kb on + strand, within Rru_A0179at 211.993 kb on + strand, within Rru_A0179at 211.993 kb on + strand, within Rru_A0179at 211.994 kb on - strand, within Rru_A0179at 211.994 kb on - strand, within Rru_A0179at 212.113 kb on + strand, within Rru_A0179at 212.113 kb on + strand, within Rru_A0179at 212.332 kb on + strand, within Rru_A0179at 212.333 kb on - strand, within Rru_A0179at 212.493 kb on + strand, within Rru_A0179at 212.493 kb on + strand, within Rru_A0179at 212.494 kb on - strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.549 kb on + strand, within Rru_A0179at 212.550 kb on - strand, within Rru_A0179at 212.550 kb on - strand, within Rru_A0179at 212.550 kb on - strand, within Rru_A0179at 212.550 kb on - strand, within Rru_A0179at 212.550 kb on - strand, within Rru_A0179at 212.552 kb on - strand, within Rru_A0179at 212.552 kb on - strand, within Rru_A0179at 212.552 kb on - strand, within Rru_A0179at 213.537 kb on + strandat 213.559 kb on - strandat 213.620 kb on - strandat 213.748 kb on + strandat 213.749 kb on - strandat 213.749 kb on - strandat 213.772 kb on - strandat 213.843 kb on + strandat 213.844 kb on - strandat 213.934 kb on - strandat 214.010 kb on + strandat 214.057 kb on + strandat 214.057 kb on + strandat 214.057 kb on + strandat 214.057 kb on + strandat 214.058 kb on - strandat 214.058 kb on - strandat 214.058 kb on - strandat 214.085 kb on - strandat 214.085 kb on - strandat 214.085 kb on - strandat 214.085 kb on - strandat 214.133 kb on - strandat 214.187 kb on - strandat 214.187 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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210,684 + +1.1
210,684 + -0.0
210,684 + +1.0
210,711 + -0.0
210,711 + +1.3
210,711 + -0.0
211,040 - +2.2
211,040 - +1.5
211,164 + -0.0
211,164 + -0.0
211,164 + +1.6
211,164 + -0.0
211,358 + Rru_A0178 0.29 +2.0
211,358 + Rru_A0178 0.29 -0.0
211,359 - Rru_A0178 0.29 -0.0
211,359 - Rru_A0178 0.29 -0.0
211,359 - Rru_A0178 0.29 +0.9
211,359 - Rru_A0178 0.29 -0.0
211,359 - Rru_A0178 0.29 +0.9
211,530 + Rru_A0178 0.85 +1.3
211,530 + Rru_A0178 0.85 -1.0
211,530 + Rru_A0178 0.85 -0.0
211,531 - Rru_A0178 0.85 -0.0
211,531 - Rru_A0178 0.85 +1.4
211,542 + Rru_A0178 0.89 +0.3
211,542 + Rru_A0178 0.89 -1.0
211,543 - Rru_A0178 0.89 +0.5
211,606 + -0.0
211,606 + +0.1
211,606 + +1.8
211,606 + +0.8
211,607 - +0.3
211,607 - +0.3
211,738 + +1.2
211,739 - +1.0
211,795 + Rru_A0179 0.12 -1.0
211,796 - Rru_A0179 0.12 +1.8
211,796 - Rru_A0179 0.12 -0.0
211,830 + Rru_A0179 0.14 +1.1
211,831 - Rru_A0179 0.14 -1.0
211,924 + Rru_A0179 0.19 +0.8
211,924 + Rru_A0179 0.19 +0.7
211,924 + Rru_A0179 0.19 -0.0
211,925 - Rru_A0179 0.19 -0.0
211,925 - Rru_A0179 0.19 +1.1
211,971 + Rru_A0179 0.22 -0.0
211,993 + Rru_A0179 0.23 +2.0
211,993 + Rru_A0179 0.23 -0.0
211,993 + Rru_A0179 0.23 +0.8
211,994 - Rru_A0179 0.23 +0.5
211,994 - Rru_A0179 0.23 +1.1
212,113 + Rru_A0179 0.30 +1.2
212,113 + Rru_A0179 0.30 +1.0
212,332 + Rru_A0179 0.42 +1.1
212,333 - Rru_A0179 0.42 +0.6
212,493 + Rru_A0179 0.52 +1.6
212,493 + Rru_A0179 0.52 +0.9
212,494 - Rru_A0179 0.52 +0.2
212,549 + Rru_A0179 0.55 +0.8
212,549 + Rru_A0179 0.55 +0.8
212,549 + Rru_A0179 0.55 -1.0
212,549 + Rru_A0179 0.55 +0.9
212,549 + Rru_A0179 0.55 -0.0
212,549 + Rru_A0179 0.55 +0.9
212,549 + Rru_A0179 0.55 -0.0
212,549 + Rru_A0179 0.55 -0.0
212,549 + Rru_A0179 0.55 -0.8
212,550 - Rru_A0179 0.55 +1.3
212,550 - Rru_A0179 0.55 -0.0
212,550 - Rru_A0179 0.55 -0.0
212,550 - Rru_A0179 0.55 -0.0
212,550 - Rru_A0179 0.55 -0.4
212,552 - Rru_A0179 0.55 -0.0
212,552 - Rru_A0179 0.55 +0.9
212,552 - Rru_A0179 0.55 +1.3
213,537 + +0.6
213,559 - -0.0
213,620 - +1.1
213,748 + +1.6
213,749 - -1.0
213,749 - -0.4
213,772 - -1.0
213,843 + -0.0
213,844 - -0.0
213,934 - -0.0
214,010 + -1.6
214,057 + +2.2
214,057 + +1.5
214,057 + +2.0
214,057 + +0.9
214,058 - -0.0
214,058 - -0.0
214,058 - -1.0
214,085 - -0.0
214,085 - -0.6
214,085 - -0.0
214,085 - +0.5
214,133 - +1.6
214,187 - +0.4
214,187 - +0.8

Or see this region's nucleotide sequence