Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0156

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0155 and Rru_A0156 are separated by 181 nucleotidesRru_A0156 and Rru_A0157 are separated by 18 nucleotides Rru_A0155: Rru_A0155 - Transcriptional Regulator, TetR family (NCBI), at 179,583 to 180,251 _A0155 Rru_A0156: Rru_A0156 - Secretion protein HlyD (NCBI), at 180,433 to 181,605 _A0156 Rru_A0157: Rru_A0157 - Drug resistance transporter EmrB/QacA subfamily (NCBI), at 181,624 to 183,198 _A0157 Position (kb) 180 181 182Strain fitness (log2 ratio) -2 -1 0 1 2 3at 179.488 kb on + strandat 179.489 kb on - strandat 179.585 kb on - strandat 179.593 kb on + strandat 179.824 kb on - strand, within Rru_A0155at 180.043 kb on + strand, within Rru_A0155at 180.043 kb on + strand, within Rru_A0155at 180.043 kb on + strand, within Rru_A0155at 180.043 kb on + strand, within Rru_A0155at 180.044 kb on - strand, within Rru_A0155at 180.044 kb on - strand, within Rru_A0155at 180.103 kb on + strand, within Rru_A0155at 180.104 kb on - strand, within Rru_A0155at 180.262 kb on - strandat 180.279 kb on + strandat 180.279 kb on + strandat 180.279 kb on + strandat 180.280 kb on - strandat 180.280 kb on - strandat 180.280 kb on - strandat 180.280 kb on - strandat 180.313 kb on + strandat 180.314 kb on - strandat 180.622 kb on + strand, within Rru_A0156at 180.622 kb on + strand, within Rru_A0156at 180.622 kb on + strand, within Rru_A0156at 180.623 kb on - strand, within Rru_A0156at 180.623 kb on - strand, within Rru_A0156at 180.624 kb on + strand, within Rru_A0156at 180.667 kb on + strand, within Rru_A0156at 180.731 kb on + strand, within Rru_A0156at 180.731 kb on + strand, within Rru_A0156at 180.731 kb on + strand, within Rru_A0156at 180.731 kb on + strand, within Rru_A0156at 180.731 kb on + strand, within Rru_A0156at 180.732 kb on - strand, within Rru_A0156at 180.732 kb on - strand, within Rru_A0156at 180.732 kb on - strand, within Rru_A0156at 180.732 kb on - strand, within Rru_A0156at 180.732 kb on - strand, within Rru_A0156at 180.736 kb on - strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.192 kb on + strand, within Rru_A0156at 181.193 kb on - strand, within Rru_A0156at 181.193 kb on - strand, within Rru_A0156at 181.193 kb on - strand, within Rru_A0156at 181.193 kb on - strand, within Rru_A0156at 181.193 kb on - strand, within Rru_A0156at 181.193 kb on - strand, within Rru_A0156at 181.321 kb on + strand, within Rru_A0156at 181.322 kb on - strand, within Rru_A0156at 181.604 kb on - strandat 181.806 kb on - strand, within Rru_A0157at 181.820 kb on + strand, within Rru_A0157at 181.821 kb on - strand, within Rru_A0157at 181.821 kb on - strand, within Rru_A0157at 182.154 kb on - strand, within Rru_A0157at 182.299 kb on + strand, within Rru_A0157at 182.299 kb on + strand, within Rru_A0157at 182.299 kb on + strand, within Rru_A0157at 182.300 kb on - strand, within Rru_A0157at 182.300 kb on - strand, within Rru_A0157at 182.300 kb on - strand, within Rru_A0157at 182.301 kb on + strand, within Rru_A0157at 182.301 kb on + strand, within Rru_A0157at 182.301 kb on + strand, within Rru_A0157at 182.302 kb on - strand, within Rru_A0157at 182.302 kb on - strand, within Rru_A0157at 182.302 kb on - strand, within Rru_A0157at 182.473 kb on + strand, within Rru_A0157at 182.474 kb on - strand, within Rru_A0157at 182.474 kb on - strand, within Rru_A0157at 182.513 kb on - strand, within Rru_A0157at 182.513 kb on - strand, within Rru_A0157

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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179,488 + +0.7
179,489 - +1.3
179,585 - -0.0
179,593 + -1.0
179,824 - Rru_A0155 0.36 -0.0
180,043 + Rru_A0155 0.69 -0.0
180,043 + Rru_A0155 0.69 +0.3
180,043 + Rru_A0155 0.69 -0.0
180,043 + Rru_A0155 0.69 -0.0
180,044 - Rru_A0155 0.69 -0.0
180,044 - Rru_A0155 0.69 -0.0
180,103 + Rru_A0155 0.78 -0.0
180,104 - Rru_A0155 0.78 -0.0
180,262 - -0.0
180,279 + +1.4
180,279 + +2.3
180,279 + +2.3
180,280 - -0.0
180,280 - +0.8
180,280 - -1.6
180,280 - +0.3
180,313 + +0.4
180,314 - +0.8
180,622 + Rru_A0156 0.16 +2.5
180,622 + Rru_A0156 0.16 +1.0
180,622 + Rru_A0156 0.16 +2.2
180,623 - Rru_A0156 0.16 +0.5
180,623 - Rru_A0156 0.16 -0.0
180,624 + Rru_A0156 0.16 -0.0
180,667 + Rru_A0156 0.20 -0.0
180,731 + Rru_A0156 0.25 +1.2
180,731 + Rru_A0156 0.25 +1.8
180,731 + Rru_A0156 0.25 -0.0
180,731 + Rru_A0156 0.25 +0.6
180,731 + Rru_A0156 0.25 +1.4
180,732 - Rru_A0156 0.25 -0.0
180,732 - Rru_A0156 0.25 +1.2
180,732 - Rru_A0156 0.25 -0.0
180,732 - Rru_A0156 0.25 +1.6
180,732 - Rru_A0156 0.25 -0.0
180,736 - Rru_A0156 0.26 +3.3
181,192 + Rru_A0156 0.65 +1.6
181,192 + Rru_A0156 0.65 -0.0
181,192 + Rru_A0156 0.65 -0.0
181,192 + Rru_A0156 0.65 +1.0
181,192 + Rru_A0156 0.65 -0.0
181,192 + Rru_A0156 0.65 +1.8
181,192 + Rru_A0156 0.65 -2.0
181,192 + Rru_A0156 0.65 +0.8
181,193 - Rru_A0156 0.65 -0.0
181,193 - Rru_A0156 0.65 +1.3
181,193 - Rru_A0156 0.65 -0.0
181,193 - Rru_A0156 0.65 +1.3
181,193 - Rru_A0156 0.65 +1.2
181,193 - Rru_A0156 0.65 +0.9
181,321 + Rru_A0156 0.76 +0.8
181,322 - Rru_A0156 0.76 -0.0
181,604 - -1.6
181,806 - Rru_A0157 0.12 +1.5
181,820 + Rru_A0157 0.12 -1.0
181,821 - Rru_A0157 0.13 -0.0
181,821 - Rru_A0157 0.13 -0.0
182,154 - Rru_A0157 0.34 +1.6
182,299 + Rru_A0157 0.43 +1.4
182,299 + Rru_A0157 0.43 -0.0
182,299 + Rru_A0157 0.43 +0.6
182,300 - Rru_A0157 0.43 +1.0
182,300 - Rru_A0157 0.43 +1.8
182,300 - Rru_A0157 0.43 +0.3
182,301 + Rru_A0157 0.43 -0.0
182,301 + Rru_A0157 0.43 -1.6
182,301 + Rru_A0157 0.43 +1.2
182,302 - Rru_A0157 0.43 +1.6
182,302 - Rru_A0157 0.43 +1.2
182,302 - Rru_A0157 0.43 +1.4
182,473 + Rru_A0157 0.54 +0.9
182,474 - Rru_A0157 0.54 +1.8
182,474 - Rru_A0157 0.54 -0.0
182,513 - Rru_A0157 0.56 -0.0
182,513 - Rru_A0157 0.56 -0.0

Or see this region's nucleotide sequence