Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0149 and Rru_A0150 are separated by 77 nucleotides Rru_A0150 and Rru_A0151 are separated by 61 nucleotides Rru_A0151 and Rru_A0152 overlap by 4 nucleotides
Rru_A0149: Rru_A0149 - PfkB (NCBI), at 173,693 to 174,916
_A0149
Rru_A0150: Rru_A0150 - hypothetical protein (NCBI), at 174,994 to 175,677
_A0150
Rru_A0151: Rru_A0151 - hypothetical protein (NCBI), at 175,739 to 176,482
_A0151
Rru_A0152: Rru_A0152 - hypothetical protein (NCBI), at 176,479 to 176,895
_A0152
Position (kb) 174
175
176 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 174.211 kb on - strand, within Rru_A0149 at 174.222 kb on + strand, within Rru_A0149 at 174.222 kb on + strand, within Rru_A0149 at 174.222 kb on + strand, within Rru_A0149 at 174.223 kb on - strand, within Rru_A0149 at 174.223 kb on - strand, within Rru_A0149 at 174.223 kb on - strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.294 kb on + strand, within Rru_A0149 at 174.295 kb on - strand, within Rru_A0149 at 174.295 kb on - strand, within Rru_A0149 at 174.493 kb on + strand, within Rru_A0149 at 174.493 kb on + strand, within Rru_A0149 at 174.494 kb on - strand, within Rru_A0149 at 174.544 kb on - strand, within Rru_A0149 at 174.695 kb on + strand, within Rru_A0149 at 174.695 kb on + strand, within Rru_A0149 at 174.695 kb on + strand, within Rru_A0149 at 174.696 kb on - strand, within Rru_A0149 at 174.696 kb on - strand, within Rru_A0149 at 174.696 kb on - strand, within Rru_A0149 at 174.696 kb on - strand, within Rru_A0149 at 174.787 kb on + strand, within Rru_A0149 at 174.850 kb on + strand at 174.850 kb on + strand at 174.850 kb on + strand at 174.852 kb on + strand at 174.852 kb on + strand at 174.852 kb on + strand at 174.852 kb on + strand at 174.853 kb on - strand at 174.853 kb on - strand at 174.853 kb on - strand at 175.087 kb on + strand, within Rru_A0150 at 175.371 kb on + strand, within Rru_A0150 at 175.371 kb on + strand, within Rru_A0150 at 175.372 kb on - strand, within Rru_A0150 at 175.374 kb on + strand, within Rru_A0150 at 175.375 kb on - strand, within Rru_A0150 at 175.375 kb on - strand, within Rru_A0150 at 175.393 kb on + strand, within Rru_A0150 at 175.394 kb on - strand, within Rru_A0150 at 175.430 kb on - strand, within Rru_A0150 at 175.444 kb on + strand, within Rru_A0150 at 175.445 kb on - strand, within Rru_A0150 at 175.676 kb on - strand at 175.690 kb on + strand at 175.690 kb on + strand at 175.691 kb on - strand at 176.026 kb on + strand, within Rru_A0151 at 176.027 kb on - strand, within Rru_A0151 at 176.027 kb on - strand, within Rru_A0151
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 174,211 - Rru_A0149 0.42 +0.3 174,222 + Rru_A0149 0.43 -0.0 174,222 + Rru_A0149 0.43 +5.2 174,222 + Rru_A0149 0.43 +1.6 174,223 - Rru_A0149 0.43 -0.0 174,223 - Rru_A0149 0.43 +1.4 174,223 - Rru_A0149 0.43 -0.0 174,294 + Rru_A0149 0.49 +0.4 174,294 + Rru_A0149 0.49 +1.4 174,294 + Rru_A0149 0.49 -1.0 174,294 + Rru_A0149 0.49 +0.5 174,294 + Rru_A0149 0.49 +1.8 174,294 + Rru_A0149 0.49 +1.7 174,294 + Rru_A0149 0.49 +1.1 174,295 - Rru_A0149 0.49 +1.1 174,295 - Rru_A0149 0.49 -0.3 174,493 + Rru_A0149 0.65 +2.4 174,493 + Rru_A0149 0.65 +2.3 174,494 - Rru_A0149 0.65 +1.4 174,544 - Rru_A0149 0.70 +2.8 174,695 + Rru_A0149 0.82 +1.0 174,695 + Rru_A0149 0.82 -0.0 174,695 + Rru_A0149 0.82 +1.3 174,696 - Rru_A0149 0.82 -1.0 174,696 - Rru_A0149 0.82 -1.0 174,696 - Rru_A0149 0.82 -0.0 174,696 - Rru_A0149 0.82 -0.0 174,787 + Rru_A0149 0.89 +0.3 174,850 + +1.5 174,850 + -0.0 174,850 + +1.7 174,852 + +2.5 174,852 + -0.0 174,852 + -0.0 174,852 + +1.3 174,853 - +1.7 174,853 - -0.0 174,853 - +2.3 175,087 + Rru_A0150 0.14 -0.0 175,371 + Rru_A0150 0.55 -0.3 175,371 + Rru_A0150 0.55 -0.0 175,372 - Rru_A0150 0.55 -0.0 175,374 + Rru_A0150 0.56 -0.0 175,375 - Rru_A0150 0.56 -0.0 175,375 - Rru_A0150 0.56 -0.0 175,393 + Rru_A0150 0.58 -0.0 175,394 - Rru_A0150 0.58 +1.6 175,430 - Rru_A0150 0.64 -0.0 175,444 + Rru_A0150 0.66 -1.1 175,445 - Rru_A0150 0.66 -0.0 175,676 - +2.8 175,690 + +0.9 175,690 + -0.0 175,691 - +1.5 176,026 + Rru_A0151 0.39 +1.6 176,027 - Rru_A0151 0.39 +1.1 176,027 - Rru_A0151 0.39 -0.0
Or see this region's nucleotide sequence