Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0137 and Rru_A0138 are separated by 25 nucleotides Rru_A0138 and Rru_A0139 are separated by 278 nucleotides Rru_A0139 and Rru_A0140 are separated by 72 nucleotides
Rru_A0137: Rru_A0137 - TRAP transporter solute receptor, TAXI family (NCBI), at 160,535 to 161,587
_A0137
Rru_A0138: Rru_A0138 - Leucyl aminopeptidase (NCBI), at 161,613 to 163,004
_A0138
Rru_A0139: Rru_A0139 - Transcriptional Regulator, MarR family (NCBI), at 163,283 to 163,636
_A0139
Rru_A0140: Rru_A0140 - Transcriptional Regulator, AraC family (NCBI), at 163,709 to 164,479
_A0140
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 160.685 kb on + strand, within Rru_A0137 at 160.686 kb on - strand, within Rru_A0137 at 160.686 kb on - strand, within Rru_A0137 at 160.816 kb on + strand, within Rru_A0137 at 160.816 kb on + strand, within Rru_A0137 at 160.887 kb on - strand, within Rru_A0137 at 160.887 kb on - strand, within Rru_A0137 at 160.887 kb on - strand, within Rru_A0137 at 160.888 kb on + strand, within Rru_A0137 at 160.888 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.951 kb on + strand, within Rru_A0137 at 160.952 kb on - strand, within Rru_A0137 at 160.952 kb on - strand, within Rru_A0137 at 160.952 kb on - strand, within Rru_A0137 at 161.321 kb on + strand, within Rru_A0137 at 161.321 kb on + strand, within Rru_A0137 at 161.322 kb on - strand, within Rru_A0137 at 161.322 kb on - strand, within Rru_A0137 at 161.537 kb on + strand at 161.538 kb on - strand at 161.538 kb on - strand at 161.538 kb on - strand at 161.538 kb on - strand at 161.838 kb on + strand, within Rru_A0138 at 161.839 kb on - strand, within Rru_A0138 at 161.880 kb on + strand, within Rru_A0138 at 161.952 kb on + strand, within Rru_A0138 at 161.953 kb on - strand, within Rru_A0138 at 162.083 kb on + strand, within Rru_A0138 at 162.084 kb on - strand, within Rru_A0138 at 162.198 kb on + strand, within Rru_A0138 at 162.198 kb on + strand, within Rru_A0138 at 162.198 kb on + strand, within Rru_A0138 at 162.198 kb on + strand, within Rru_A0138 at 162.199 kb on - strand, within Rru_A0138 at 162.199 kb on - strand, within Rru_A0138 at 162.199 kb on - strand, within Rru_A0138 at 162.199 kb on - strand, within Rru_A0138 at 162.371 kb on + strand, within Rru_A0138 at 162.372 kb on - strand, within Rru_A0138 at 162.372 kb on - strand, within Rru_A0138 at 162.542 kb on + strand, within Rru_A0138 at 162.543 kb on - strand, within Rru_A0138 at 162.667 kb on + strand, within Rru_A0138 at 162.667 kb on + strand, within Rru_A0138 at 162.668 kb on - strand, within Rru_A0138 at 163.061 kb on + strand at 163.138 kb on + strand at 163.156 kb on + strand at 163.157 kb on - strand at 163.163 kb on + strand at 163.163 kb on + strand at 163.163 kb on + strand at 163.164 kb on - strand at 163.164 kb on - strand at 163.164 kb on - strand at 163.166 kb on + strand at 163.195 kb on + strand at 163.196 kb on - strand at 163.196 kb on - strand at 163.196 kb on - strand at 163.268 kb on + strand at 163.320 kb on + strand, within Rru_A0139 at 163.321 kb on - strand, within Rru_A0139 at 163.403 kb on + strand, within Rru_A0139 at 163.404 kb on - strand, within Rru_A0139 at 163.404 kb on - strand, within Rru_A0139 at 163.516 kb on + strand, within Rru_A0139 at 163.516 kb on + strand, within Rru_A0139 at 163.516 kb on + strand, within Rru_A0139 at 163.517 kb on - strand, within Rru_A0139 at 163.676 kb on - strand at 163.676 kb on - strand at 163.684 kb on + strand at 163.684 kb on + strand at 163.684 kb on + strand at 163.684 kb on + strand at 163.684 kb on + strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.687 kb on - strand at 163.717 kb on + strand at 163.718 kb on - strand at 163.730 kb on + strand at 163.730 kb on + strand at 163.730 kb on + strand at 163.731 kb on - strand at 163.731 kb on - strand at 163.776 kb on - strand at 163.776 kb on - strand at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.829 kb on + strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.868 kb on + strand, within Rru_A0140 at 163.868 kb on + strand, within Rru_A0140 at 163.868 kb on + strand, within Rru_A0140 at 163.869 kb on - strand, within Rru_A0140 at 163.869 kb on - strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.967 kb on - strand, within Rru_A0140
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 160,685 + Rru_A0137 0.14 -0.0 160,686 - Rru_A0137 0.14 -0.0 160,686 - Rru_A0137 0.14 -0.0 160,816 + Rru_A0137 0.27 -0.0 160,816 + Rru_A0137 0.27 -0.0 160,887 - Rru_A0137 0.33 -0.0 160,887 - Rru_A0137 0.33 +1.6 160,887 - Rru_A0137 0.33 -0.0 160,888 + Rru_A0137 0.34 -0.0 160,888 + Rru_A0137 0.34 -0.0 160,949 + Rru_A0137 0.39 +1.3 160,949 + Rru_A0137 0.39 -1.6 160,949 + Rru_A0137 0.39 -1.0 160,949 + Rru_A0137 0.39 -1.0 160,950 - Rru_A0137 0.39 -0.6 160,950 - Rru_A0137 0.39 -0.0 160,950 - Rru_A0137 0.39 -0.0 160,950 - Rru_A0137 0.39 -1.0 160,951 + Rru_A0137 0.40 -1.6 160,952 - Rru_A0137 0.40 -0.0 160,952 - Rru_A0137 0.40 -0.0 160,952 - Rru_A0137 0.40 -0.0 161,321 + Rru_A0137 0.75 -0.0 161,321 + Rru_A0137 0.75 -1.0 161,322 - Rru_A0137 0.75 -1.0 161,322 - Rru_A0137 0.75 -1.0 161,537 + -0.0 161,538 - -0.0 161,538 - +0.8 161,538 - +0.6 161,538 - -0.6 161,838 + Rru_A0138 0.16 -0.0 161,839 - Rru_A0138 0.16 +0.8 161,880 + Rru_A0138 0.19 -0.0 161,952 + Rru_A0138 0.24 -0.0 161,953 - Rru_A0138 0.24 -1.2 162,083 + Rru_A0138 0.34 -1.0 162,084 - Rru_A0138 0.34 -0.0 162,198 + Rru_A0138 0.42 +0.9 162,198 + Rru_A0138 0.42 -0.0 162,198 + Rru_A0138 0.42 +0.6 162,198 + Rru_A0138 0.42 -0.0 162,199 - Rru_A0138 0.42 -0.1 162,199 - Rru_A0138 0.42 +0.7 162,199 - Rru_A0138 0.42 +1.2 162,199 - Rru_A0138 0.42 -0.0 162,371 + Rru_A0138 0.54 +0.6 162,372 - Rru_A0138 0.55 +0.3 162,372 - Rru_A0138 0.55 -0.0 162,542 + Rru_A0138 0.67 +1.5 162,543 - Rru_A0138 0.67 -1.0 162,667 + Rru_A0138 0.76 -0.0 162,667 + Rru_A0138 0.76 -0.0 162,668 - Rru_A0138 0.76 +0.1 163,061 + -0.0 163,138 + -0.0 163,156 + -0.0 163,157 - +0.8 163,163 + -0.0 163,163 + +0.8 163,163 + +1.3 163,164 - -0.0 163,164 - +1.3 163,164 - -0.0 163,166 + -0.0 163,195 + +1.0 163,196 - -0.0 163,196 - -0.0 163,196 - -0.0 163,268 + -0.0 163,320 + Rru_A0139 0.10 -1.0 163,321 - Rru_A0139 0.11 -0.2 163,403 + Rru_A0139 0.34 -1.0 163,404 - Rru_A0139 0.34 -0.0 163,404 - Rru_A0139 0.34 -0.0 163,516 + Rru_A0139 0.66 -0.0 163,516 + Rru_A0139 0.66 -0.0 163,516 + Rru_A0139 0.66 +1.2 163,517 - Rru_A0139 0.66 +1.2 163,676 - -0.0 163,676 - +1.4 163,684 + -0.0 163,684 + +0.6 163,684 + -0.0 163,684 + +1.6 163,684 + +0.7 163,685 - +1.4 163,685 - +1.6 163,685 - +0.2 163,685 - +1.0 163,685 - -0.0 163,685 - +0.2 163,685 - +1.4 163,685 - +0.9 163,687 - +0.6 163,717 + -0.0 163,718 - +1.4 163,730 + -0.0 163,730 + +1.0 163,730 + +0.5 163,731 - +4.2 163,731 - -0.0 163,776 - +0.9 163,776 - +0.8 163,827 + Rru_A0140 0.15 -0.0 163,827 + Rru_A0140 0.15 +1.3 163,827 + Rru_A0140 0.15 -0.0 163,827 + Rru_A0140 0.15 -0.0 163,827 + Rru_A0140 0.15 +0.5 163,827 + Rru_A0140 0.15 +1.3 163,827 + Rru_A0140 0.15 +0.7 163,827 + Rru_A0140 0.15 +1.6 163,828 - Rru_A0140 0.15 +0.8 163,828 - Rru_A0140 0.15 +1.6 163,828 - Rru_A0140 0.15 +2.2 163,828 - Rru_A0140 0.15 -0.0 163,828 - Rru_A0140 0.15 +1.6 163,829 + Rru_A0140 0.16 +1.6 163,830 - Rru_A0140 0.16 -0.0 163,830 - Rru_A0140 0.16 -1.1 163,830 - Rru_A0140 0.16 +1.4 163,830 - Rru_A0140 0.16 +1.4 163,830 - Rru_A0140 0.16 +1.2 163,868 + Rru_A0140 0.21 +1.7 163,868 + Rru_A0140 0.21 -0.2 163,868 + Rru_A0140 0.21 +1.4 163,869 - Rru_A0140 0.21 -0.0 163,869 - Rru_A0140 0.21 -0.0 163,964 + Rru_A0140 0.33 -1.0 163,964 + Rru_A0140 0.33 +0.6 163,964 + Rru_A0140 0.33 +0.6 163,964 + Rru_A0140 0.33 +1.0 163,964 + Rru_A0140 0.33 +1.0 163,965 - Rru_A0140 0.33 -0.0 163,965 - Rru_A0140 0.33 -0.0 163,965 - Rru_A0140 0.33 +1.0 163,965 - Rru_A0140 0.33 -0.0 163,965 - Rru_A0140 0.33 +0.2 163,967 - Rru_A0140 0.33 -0.0
Or see this region's nucleotide sequence