Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0134 and Rru_A0135 are separated by 59 nucleotides Rru_A0135 and Rru_A0136 are separated by 118 nucleotides
Rru_A0134: Rru_A0134 - Succinic semialdehyde dehydrogenase (NCBI), at 157,179 to 158,666
_A0134
Rru_A0135: Rru_A0135 - molybdenum ABC transporter ATP-binding protein (NCBI), at 158,726 to 159,301
_A0135
Rru_A0136: Rru_A0136 - Protein of unknown function DUF6, transmembrane (NCBI), at 159,420 to 160,346
_A0136
Position (kb) 158
159
160 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 157.764 kb on - strand, within Rru_A0134 at 158.100 kb on + strand, within Rru_A0134 at 158.100 kb on + strand, within Rru_A0134 at 158.101 kb on - strand, within Rru_A0134 at 158.118 kb on + strand, within Rru_A0134 at 158.118 kb on + strand, within Rru_A0134 at 158.118 kb on + strand, within Rru_A0134 at 158.118 kb on + strand, within Rru_A0134 at 158.118 kb on + strand, within Rru_A0134 at 158.118 kb on + strand, within Rru_A0134 at 158.119 kb on - strand, within Rru_A0134 at 158.119 kb on - strand, within Rru_A0134 at 158.119 kb on - strand, within Rru_A0134 at 158.119 kb on - strand, within Rru_A0134 at 158.119 kb on - strand, within Rru_A0134 at 158.316 kb on + strand, within Rru_A0134 at 158.316 kb on + strand, within Rru_A0134 at 158.316 kb on + strand, within Rru_A0134 at 158.317 kb on - strand, within Rru_A0134 at 158.317 kb on - strand, within Rru_A0134 at 158.463 kb on + strand, within Rru_A0134 at 158.464 kb on - strand, within Rru_A0134 at 158.464 kb on - strand, within Rru_A0134 at 158.464 kb on - strand, within Rru_A0134 at 158.512 kb on + strand, within Rru_A0134 at 158.512 kb on + strand, within Rru_A0134 at 158.513 kb on - strand, within Rru_A0134 at 158.513 kb on - strand, within Rru_A0134 at 158.513 kb on - strand, within Rru_A0134 at 158.513 kb on - strand, within Rru_A0134 at 158.643 kb on + strand at 158.643 kb on + strand at 158.643 kb on + strand at 158.643 kb on + strand at 158.643 kb on + strand at 158.644 kb on - strand at 158.644 kb on - strand at 158.644 kb on - strand at 159.076 kb on - strand, within Rru_A0135 at 159.085 kb on + strand, within Rru_A0135 at 159.185 kb on + strand, within Rru_A0135 at 159.185 kb on + strand, within Rru_A0135 at 159.185 kb on + strand, within Rru_A0135 at 159.186 kb on - strand, within Rru_A0135 at 159.189 kb on + strand, within Rru_A0135 at 159.189 kb on + strand, within Rru_A0135 at 159.190 kb on - strand, within Rru_A0135 at 159.304 kb on + strand at 159.304 kb on + strand at 159.305 kb on - strand at 159.305 kb on - strand at 159.305 kb on - strand at 159.343 kb on + strand at 159.678 kb on + strand, within Rru_A0136 at 159.963 kb on + strand, within Rru_A0136 at 159.963 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.056 kb on - strand, within Rru_A0136 at 160.056 kb on - strand, within Rru_A0136 at 160.056 kb on - strand, within Rru_A0136 at 160.200 kb on + strand, within Rru_A0136 at 160.200 kb on + strand, within Rru_A0136 at 160.200 kb on + strand, within Rru_A0136 at 160.201 kb on - strand, within Rru_A0136
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 157,764 - Rru_A0134 0.39 +1.0 158,100 + Rru_A0134 0.62 -0.0 158,100 + Rru_A0134 0.62 +0.7 158,101 - Rru_A0134 0.62 -1.0 158,118 + Rru_A0134 0.63 -0.0 158,118 + Rru_A0134 0.63 -0.0 158,118 + Rru_A0134 0.63 +1.7 158,118 + Rru_A0134 0.63 -0.3 158,118 + Rru_A0134 0.63 -0.1 158,118 + Rru_A0134 0.63 +1.3 158,119 - Rru_A0134 0.63 +1.0 158,119 - Rru_A0134 0.63 +1.4 158,119 - Rru_A0134 0.63 -0.0 158,119 - Rru_A0134 0.63 -0.0 158,119 - Rru_A0134 0.63 +0.9 158,316 + Rru_A0134 0.76 +1.2 158,316 + Rru_A0134 0.76 -0.0 158,316 + Rru_A0134 0.76 -0.0 158,317 - Rru_A0134 0.76 +1.6 158,317 - Rru_A0134 0.76 +1.8 158,463 + Rru_A0134 0.86 +1.1 158,464 - Rru_A0134 0.86 +2.3 158,464 - Rru_A0134 0.86 +1.5 158,464 - Rru_A0134 0.86 +0.6 158,512 + Rru_A0134 0.90 -0.0 158,512 + Rru_A0134 0.90 +1.5 158,513 - Rru_A0134 0.90 +0.4 158,513 - Rru_A0134 0.90 +0.2 158,513 - Rru_A0134 0.90 -0.0 158,513 - Rru_A0134 0.90 -0.0 158,643 + +1.0 158,643 + +1.9 158,643 + +4.2 158,643 + -0.0 158,643 + +1.6 158,644 - +0.8 158,644 - +0.4 158,644 - -1.6 159,076 - Rru_A0135 0.61 +0.2 159,085 + Rru_A0135 0.62 +0.7 159,185 + Rru_A0135 0.80 -1.0 159,185 + Rru_A0135 0.80 +1.2 159,185 + Rru_A0135 0.80 +0.1 159,186 - Rru_A0135 0.80 +1.2 159,189 + Rru_A0135 0.80 -0.0 159,189 + Rru_A0135 0.80 +0.6 159,190 - Rru_A0135 0.81 -1.0 159,304 + +1.4 159,304 + +1.4 159,305 - +2.4 159,305 - +0.7 159,305 - -0.7 159,343 + -0.0 159,678 + Rru_A0136 0.28 -0.0 159,963 + Rru_A0136 0.59 +2.6 159,963 + Rru_A0136 0.59 +0.8 160,055 + Rru_A0136 0.69 +1.2 160,055 + Rru_A0136 0.69 +2.6 160,055 + Rru_A0136 0.69 +0.7 160,055 + Rru_A0136 0.69 -0.0 160,056 - Rru_A0136 0.69 +0.7 160,056 - Rru_A0136 0.69 -0.0 160,056 - Rru_A0136 0.69 -0.3 160,200 + Rru_A0136 0.84 +2.7 160,200 + Rru_A0136 0.84 -0.0 160,200 + Rru_A0136 0.84 +3.7 160,201 - Rru_A0136 0.84 -0.0
Or see this region's nucleotide sequence