Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0134

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0133 and Rru_A0134 are separated by 117 nucleotidesRru_A0134 and Rru_A0135 are separated by 59 nucleotidesRru_A0135 and Rru_A0136 are separated by 118 nucleotides Rru_A0133: Rru_A0133 - Glycosyl transferase, group 1 (NCBI), at 156,027 to 157,061 _A0133 Rru_A0134: Rru_A0134 - Succinic semialdehyde dehydrogenase (NCBI), at 157,179 to 158,666 _A0134 Rru_A0135: Rru_A0135 - molybdenum ABC transporter ATP-binding protein (NCBI), at 158,726 to 159,301 _A0135 Rru_A0136: Rru_A0136 - Protein of unknown function DUF6, transmembrane (NCBI), at 159,420 to 160,346 _A0136 Position (kb) 157 158 159Strain fitness (log2 ratio) -1 0 1 2 3 4at 156.333 kb on + strand, within Rru_A0133at 156.333 kb on + strand, within Rru_A0133at 156.333 kb on + strand, within Rru_A0133at 156.354 kb on + strand, within Rru_A0133at 156.354 kb on + strand, within Rru_A0133at 156.354 kb on + strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.576 kb on + strand, within Rru_A0133at 156.576 kb on + strand, within Rru_A0133at 156.576 kb on + strand, within Rru_A0133at 156.958 kb on - strandat 157.131 kb on + strandat 157.132 kb on - strandat 157.132 kb on - strandat 157.132 kb on - strandat 157.190 kb on + strandat 157.191 kb on - strandat 157.251 kb on + strandat 157.251 kb on + strandat 157.252 kb on - strandat 157.252 kb on - strandat 157.252 kb on - strandat 157.343 kb on + strand, within Rru_A0134at 157.590 kb on + strand, within Rru_A0134at 157.764 kb on - strand, within Rru_A0134at 158.100 kb on + strand, within Rru_A0134at 158.100 kb on + strand, within Rru_A0134at 158.101 kb on - strand, within Rru_A0134at 158.118 kb on + strand, within Rru_A0134at 158.118 kb on + strand, within Rru_A0134at 158.118 kb on + strand, within Rru_A0134at 158.118 kb on + strand, within Rru_A0134at 158.118 kb on + strand, within Rru_A0134at 158.118 kb on + strand, within Rru_A0134at 158.119 kb on - strand, within Rru_A0134at 158.119 kb on - strand, within Rru_A0134at 158.119 kb on - strand, within Rru_A0134at 158.119 kb on - strand, within Rru_A0134at 158.119 kb on - strand, within Rru_A0134at 158.316 kb on + strand, within Rru_A0134at 158.316 kb on + strand, within Rru_A0134at 158.316 kb on + strand, within Rru_A0134at 158.317 kb on - strand, within Rru_A0134at 158.317 kb on - strand, within Rru_A0134at 158.463 kb on + strand, within Rru_A0134at 158.464 kb on - strand, within Rru_A0134at 158.464 kb on - strand, within Rru_A0134at 158.464 kb on - strand, within Rru_A0134at 158.512 kb on + strand, within Rru_A0134at 158.512 kb on + strand, within Rru_A0134at 158.513 kb on - strand, within Rru_A0134at 158.513 kb on - strand, within Rru_A0134at 158.513 kb on - strand, within Rru_A0134at 158.513 kb on - strand, within Rru_A0134at 158.643 kb on + strandat 158.643 kb on + strandat 158.643 kb on + strandat 158.643 kb on + strandat 158.643 kb on + strandat 158.644 kb on - strandat 158.644 kb on - strandat 158.644 kb on - strandat 159.076 kb on - strand, within Rru_A0135at 159.085 kb on + strand, within Rru_A0135at 159.185 kb on + strand, within Rru_A0135at 159.185 kb on + strand, within Rru_A0135at 159.185 kb on + strand, within Rru_A0135at 159.186 kb on - strand, within Rru_A0135at 159.189 kb on + strand, within Rru_A0135at 159.189 kb on + strand, within Rru_A0135at 159.190 kb on - strand, within Rru_A0135at 159.304 kb on + strandat 159.304 kb on + strandat 159.305 kb on - strandat 159.305 kb on - strandat 159.305 kb on - strandat 159.343 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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156,333 + Rru_A0133 0.30 +0.9
156,333 + Rru_A0133 0.30 +0.8
156,333 + Rru_A0133 0.30 +1.2
156,354 + Rru_A0133 0.32 -0.0
156,354 + Rru_A0133 0.32 -0.0
156,354 + Rru_A0133 0.32 +1.7
156,355 - Rru_A0133 0.32 +1.6
156,355 - Rru_A0133 0.32 -0.0
156,355 - Rru_A0133 0.32 -0.0
156,355 - Rru_A0133 0.32 +0.8
156,355 - Rru_A0133 0.32 -0.0
156,393 + Rru_A0133 0.35 -0.0
156,393 + Rru_A0133 0.35 +0.9
156,393 + Rru_A0133 0.35 -0.0
156,393 + Rru_A0133 0.35 +1.4
156,393 + Rru_A0133 0.35 +1.4
156,394 - Rru_A0133 0.35 +1.2
156,394 - Rru_A0133 0.35 +0.4
156,394 - Rru_A0133 0.35 +0.9
156,394 - Rru_A0133 0.35 +0.6
156,395 + Rru_A0133 0.36 -0.0
156,395 + Rru_A0133 0.36 +1.2
156,395 + Rru_A0133 0.36 -0.0
156,395 + Rru_A0133 0.36 -0.5
156,396 - Rru_A0133 0.36 +1.3
156,396 - Rru_A0133 0.36 +1.8
156,396 - Rru_A0133 0.36 -0.0
156,396 - Rru_A0133 0.36 -1.0
156,396 - Rru_A0133 0.36 +1.2
156,396 - Rru_A0133 0.36 +1.1
156,396 - Rru_A0133 0.36 +1.0
156,396 - Rru_A0133 0.36 +1.4
156,576 + Rru_A0133 0.53 -0.0
156,576 + Rru_A0133 0.53 +1.0
156,576 + Rru_A0133 0.53 +1.1
156,958 - +0.9
157,131 + -0.0
157,132 - +1.6
157,132 - +1.3
157,132 - -0.0
157,190 + +1.1
157,191 - -1.0
157,251 + -0.0
157,251 + +1.0
157,252 - -0.0
157,252 - -0.0
157,252 - -1.0
157,343 + Rru_A0134 0.11 +1.8
157,590 + Rru_A0134 0.28 -0.0
157,764 - Rru_A0134 0.39 +1.0
158,100 + Rru_A0134 0.62 -0.0
158,100 + Rru_A0134 0.62 +0.7
158,101 - Rru_A0134 0.62 -1.0
158,118 + Rru_A0134 0.63 -0.0
158,118 + Rru_A0134 0.63 -0.0
158,118 + Rru_A0134 0.63 +1.7
158,118 + Rru_A0134 0.63 -0.3
158,118 + Rru_A0134 0.63 -0.1
158,118 + Rru_A0134 0.63 +1.3
158,119 - Rru_A0134 0.63 +1.0
158,119 - Rru_A0134 0.63 +1.4
158,119 - Rru_A0134 0.63 -0.0
158,119 - Rru_A0134 0.63 -0.0
158,119 - Rru_A0134 0.63 +0.9
158,316 + Rru_A0134 0.76 +1.2
158,316 + Rru_A0134 0.76 -0.0
158,316 + Rru_A0134 0.76 -0.0
158,317 - Rru_A0134 0.76 +1.6
158,317 - Rru_A0134 0.76 +1.8
158,463 + Rru_A0134 0.86 +1.1
158,464 - Rru_A0134 0.86 +2.3
158,464 - Rru_A0134 0.86 +1.5
158,464 - Rru_A0134 0.86 +0.6
158,512 + Rru_A0134 0.90 -0.0
158,512 + Rru_A0134 0.90 +1.5
158,513 - Rru_A0134 0.90 +0.4
158,513 - Rru_A0134 0.90 +0.2
158,513 - Rru_A0134 0.90 -0.0
158,513 - Rru_A0134 0.90 -0.0
158,643 + +1.0
158,643 + +1.9
158,643 + +4.2
158,643 + -0.0
158,643 + +1.6
158,644 - +0.8
158,644 - +0.4
158,644 - -1.6
159,076 - Rru_A0135 0.61 +0.2
159,085 + Rru_A0135 0.62 +0.7
159,185 + Rru_A0135 0.80 -1.0
159,185 + Rru_A0135 0.80 +1.2
159,185 + Rru_A0135 0.80 +0.1
159,186 - Rru_A0135 0.80 +1.2
159,189 + Rru_A0135 0.80 -0.0
159,189 + Rru_A0135 0.80 +0.6
159,190 - Rru_A0135 0.81 -1.0
159,304 + +1.4
159,304 + +1.4
159,305 - +2.4
159,305 - +0.7
159,305 - -0.7
159,343 + -0.0

Or see this region's nucleotide sequence