Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0133

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0132 and Rru_A0133 are separated by 231 nucleotidesRru_A0133 and Rru_A0134 are separated by 117 nucleotides Rru_A0132: Rru_A0132 - Peptidase S13, D-Ala-D-Ala carboxypeptidase C (NCBI), at 154,209 to 155,795 _A0132 Rru_A0133: Rru_A0133 - Glycosyl transferase, group 1 (NCBI), at 156,027 to 157,061 _A0133 Rru_A0134: Rru_A0134 - Succinic semialdehyde dehydrogenase (NCBI), at 157,179 to 158,666 _A0134 Position (kb) 156 157 158Strain fitness (log2 ratio) -1 0 1 2at 155.065 kb on + strand, within Rru_A0132at 155.065 kb on + strand, within Rru_A0132at 155.065 kb on + strand, within Rru_A0132at 155.065 kb on + strand, within Rru_A0132at 155.242 kb on + strand, within Rru_A0132at 155.242 kb on + strand, within Rru_A0132at 155.242 kb on + strand, within Rru_A0132at 155.242 kb on + strand, within Rru_A0132at 155.305 kb on + strand, within Rru_A0132at 155.306 kb on - strand, within Rru_A0132at 155.410 kb on + strand, within Rru_A0132at 155.410 kb on + strand, within Rru_A0132at 155.410 kb on + strand, within Rru_A0132at 155.410 kb on + strand, within Rru_A0132at 155.410 kb on + strand, within Rru_A0132at 155.411 kb on - strand, within Rru_A0132at 155.411 kb on - strand, within Rru_A0132at 155.477 kb on - strand, within Rru_A0132at 155.558 kb on + strand, within Rru_A0132at 155.799 kb on + strandat 155.799 kb on + strandat 155.800 kb on - strandat 155.972 kb on + strandat 155.972 kb on + strandat 155.972 kb on + strandat 155.973 kb on - strandat 155.973 kb on - strandat 155.973 kb on - strandat 155.973 kb on - strandat 155.973 kb on - strandat 155.974 kb on + strandat 156.007 kb on + strandat 156.007 kb on + strandat 156.008 kb on - strandat 156.137 kb on + strand, within Rru_A0133at 156.138 kb on - strand, within Rru_A0133at 156.178 kb on - strand, within Rru_A0133at 156.333 kb on + strand, within Rru_A0133at 156.333 kb on + strand, within Rru_A0133at 156.333 kb on + strand, within Rru_A0133at 156.354 kb on + strand, within Rru_A0133at 156.354 kb on + strand, within Rru_A0133at 156.354 kb on + strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.355 kb on - strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.393 kb on + strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.394 kb on - strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.395 kb on + strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.396 kb on - strand, within Rru_A0133at 156.576 kb on + strand, within Rru_A0133at 156.576 kb on + strand, within Rru_A0133at 156.576 kb on + strand, within Rru_A0133at 156.958 kb on - strandat 157.131 kb on + strandat 157.132 kb on - strandat 157.132 kb on - strandat 157.132 kb on - strandat 157.190 kb on + strandat 157.191 kb on - strandat 157.251 kb on + strandat 157.251 kb on + strandat 157.252 kb on - strandat 157.252 kb on - strandat 157.252 kb on - strandat 157.343 kb on + strand, within Rru_A0134at 157.590 kb on + strand, within Rru_A0134at 157.764 kb on - strand, within Rru_A0134

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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155,065 + Rru_A0132 0.54 -0.0
155,065 + Rru_A0132 0.54 +1.8
155,065 + Rru_A0132 0.54 -0.0
155,065 + Rru_A0132 0.54 +0.7
155,242 + Rru_A0132 0.65 -0.0
155,242 + Rru_A0132 0.65 +0.9
155,242 + Rru_A0132 0.65 -1.0
155,242 + Rru_A0132 0.65 +1.6
155,305 + Rru_A0132 0.69 -0.4
155,306 - Rru_A0132 0.69 +1.0
155,410 + Rru_A0132 0.76 +1.3
155,410 + Rru_A0132 0.76 -0.4
155,410 + Rru_A0132 0.76 +1.2
155,410 + Rru_A0132 0.76 -0.0
155,410 + Rru_A0132 0.76 +1.9
155,411 - Rru_A0132 0.76 +1.0
155,411 - Rru_A0132 0.76 +1.2
155,477 - Rru_A0132 0.80 -0.0
155,558 + Rru_A0132 0.85 -0.0
155,799 + +1.2
155,799 + -0.0
155,800 - -0.0
155,972 + +0.7
155,972 + -0.0
155,972 + -0.5
155,973 - -0.0
155,973 - +1.7
155,973 - +2.4
155,973 - +2.0
155,973 - +1.8
155,974 + +2.3
156,007 + -0.0
156,007 + +0.7
156,008 - +2.6
156,137 + Rru_A0133 0.11 -0.0
156,138 - Rru_A0133 0.11 +1.4
156,178 - Rru_A0133 0.15 +1.8
156,333 + Rru_A0133 0.30 +0.9
156,333 + Rru_A0133 0.30 +0.8
156,333 + Rru_A0133 0.30 +1.2
156,354 + Rru_A0133 0.32 -0.0
156,354 + Rru_A0133 0.32 -0.0
156,354 + Rru_A0133 0.32 +1.7
156,355 - Rru_A0133 0.32 +1.6
156,355 - Rru_A0133 0.32 -0.0
156,355 - Rru_A0133 0.32 -0.0
156,355 - Rru_A0133 0.32 +0.8
156,355 - Rru_A0133 0.32 -0.0
156,393 + Rru_A0133 0.35 -0.0
156,393 + Rru_A0133 0.35 +0.9
156,393 + Rru_A0133 0.35 -0.0
156,393 + Rru_A0133 0.35 +1.4
156,393 + Rru_A0133 0.35 +1.4
156,394 - Rru_A0133 0.35 +1.2
156,394 - Rru_A0133 0.35 +0.4
156,394 - Rru_A0133 0.35 +0.9
156,394 - Rru_A0133 0.35 +0.6
156,395 + Rru_A0133 0.36 -0.0
156,395 + Rru_A0133 0.36 +1.2
156,395 + Rru_A0133 0.36 -0.0
156,395 + Rru_A0133 0.36 -0.5
156,396 - Rru_A0133 0.36 +1.3
156,396 - Rru_A0133 0.36 +1.8
156,396 - Rru_A0133 0.36 -0.0
156,396 - Rru_A0133 0.36 -1.0
156,396 - Rru_A0133 0.36 +1.2
156,396 - Rru_A0133 0.36 +1.1
156,396 - Rru_A0133 0.36 +1.0
156,396 - Rru_A0133 0.36 +1.4
156,576 + Rru_A0133 0.53 -0.0
156,576 + Rru_A0133 0.53 +1.0
156,576 + Rru_A0133 0.53 +1.1
156,958 - +0.9
157,131 + -0.0
157,132 - +1.6
157,132 - +1.3
157,132 - -0.0
157,190 + +1.1
157,191 - -1.0
157,251 + -0.0
157,251 + +1.0
157,252 - -0.0
157,252 - -0.0
157,252 - -1.0
157,343 + Rru_A0134 0.11 +1.8
157,590 + Rru_A0134 0.28 -0.0
157,764 - Rru_A0134 0.39 +1.0

Or see this region's nucleotide sequence