Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0131

Experiment: Succinic Acid; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0130 and Rru_A0131 are separated by 246 nucleotidesRru_A0131 and Rru_A0132 are separated by 19 nucleotides Rru_A0130: Rru_A0130 - chemotaxis sensory transducer (NCBI), at 151,454 to 152,929 _A0130 Rru_A0131: Rru_A0131 - Response regulator receiver (CheY) and unknown domain protein (NCBI), at 153,176 to 154,189 _A0131 Rru_A0132: Rru_A0132 - Peptidase S13, D-Ala-D-Ala carboxypeptidase C (NCBI), at 154,209 to 155,795 _A0132 Position (kb) 153 154 155Strain fitness (log2 ratio) -2 -1 0 1 2 3at 152.535 kb on + strand, within Rru_A0130at 152.562 kb on + strand, within Rru_A0130at 152.562 kb on + strand, within Rru_A0130at 152.563 kb on - strand, within Rru_A0130at 152.563 kb on - strand, within Rru_A0130at 152.574 kb on + strand, within Rru_A0130at 152.993 kb on + strandat 152.993 kb on + strandat 153.020 kb on + strandat 153.020 kb on + strandat 153.020 kb on + strandat 153.020 kb on + strandat 153.021 kb on - strandat 153.021 kb on - strandat 153.022 kb on + strandat 153.022 kb on + strandat 153.022 kb on + strandat 153.023 kb on - strandat 153.032 kb on + strandat 153.043 kb on + strandat 153.057 kb on + strandat 153.057 kb on + strandat 153.058 kb on - strandat 153.069 kb on + strandat 153.138 kb on + strandat 153.138 kb on + strandat 153.138 kb on + strandat 153.138 kb on + strandat 153.139 kb on - strandat 153.139 kb on - strandat 153.139 kb on - strandat 153.139 kb on - strandat 153.151 kb on - strandat 153.151 kb on - strandat 153.151 kb on - strandat 153.151 kb on - strandat 153.347 kb on + strand, within Rru_A0131at 153.347 kb on + strand, within Rru_A0131at 153.347 kb on + strand, within Rru_A0131at 153.347 kb on + strand, within Rru_A0131at 153.348 kb on - strand, within Rru_A0131at 153.356 kb on + strand, within Rru_A0131at 153.507 kb on + strand, within Rru_A0131at 153.507 kb on + strand, within Rru_A0131at 153.507 kb on + strand, within Rru_A0131at 153.508 kb on - strand, within Rru_A0131at 153.508 kb on - strand, within Rru_A0131at 153.557 kb on + strand, within Rru_A0131at 153.557 kb on + strand, within Rru_A0131at 153.557 kb on + strand, within Rru_A0131at 153.557 kb on + strand, within Rru_A0131at 153.558 kb on - strand, within Rru_A0131at 153.558 kb on - strand, within Rru_A0131at 153.558 kb on - strand, within Rru_A0131at 153.558 kb on - strand, within Rru_A0131at 153.558 kb on - strand, within Rru_A0131at 153.573 kb on - strand, within Rru_A0131at 153.639 kb on - strand, within Rru_A0131at 153.710 kb on + strand, within Rru_A0131at 153.710 kb on + strand, within Rru_A0131at 153.711 kb on - strand, within Rru_A0131at 153.875 kb on + strand, within Rru_A0131at 153.875 kb on + strand, within Rru_A0131at 153.875 kb on + strand, within Rru_A0131at 153.992 kb on + strand, within Rru_A0131at 153.992 kb on + strand, within Rru_A0131at 153.992 kb on + strand, within Rru_A0131at 153.993 kb on - strand, within Rru_A0131at 153.993 kb on - strand, within Rru_A0131at 153.993 kb on - strand, within Rru_A0131at 154.093 kb on + strandat 154.093 kb on + strandat 154.093 kb on + strandat 154.093 kb on + strandat 154.093 kb on + strandat 154.094 kb on - strandat 154.094 kb on - strandat 154.213 kb on + strandat 154.213 kb on + strandat 154.213 kb on + strandat 154.214 kb on - strandat 154.214 kb on - strandat 154.214 kb on - strandat 154.394 kb on + strand, within Rru_A0132at 154.395 kb on - strand, within Rru_A0132at 154.396 kb on + strand, within Rru_A0132at 154.396 kb on + strand, within Rru_A0132at 154.397 kb on - strand, within Rru_A0132at 154.420 kb on + strand, within Rru_A0132at 154.420 kb on + strand, within Rru_A0132at 154.420 kb on + strand, within Rru_A0132at 154.421 kb on - strand, within Rru_A0132at 154.421 kb on - strand, within Rru_A0132at 154.525 kb on + strand, within Rru_A0132at 154.525 kb on + strand, within Rru_A0132at 154.558 kb on + strand, within Rru_A0132at 154.558 kb on + strand, within Rru_A0132at 154.559 kb on - strand, within Rru_A0132at 154.559 kb on - strand, within Rru_A0132at 154.821 kb on + strand, within Rru_A0132at 155.065 kb on + strand, within Rru_A0132at 155.065 kb on + strand, within Rru_A0132at 155.065 kb on + strand, within Rru_A0132at 155.065 kb on + strand, within Rru_A0132

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM
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152,535 + Rru_A0130 0.73 +0.4
152,562 + Rru_A0130 0.75 +0.6
152,562 + Rru_A0130 0.75 +0.5
152,563 - Rru_A0130 0.75 +2.1
152,563 - Rru_A0130 0.75 -0.0
152,574 + Rru_A0130 0.76 +1.0
152,993 + -0.0
152,993 + -0.0
153,020 + +1.0
153,020 + +1.0
153,020 + -2.6
153,020 + -0.0
153,021 - +3.1
153,021 - +1.1
153,022 + -1.0
153,022 + +2.0
153,022 + +0.9
153,023 - -0.0
153,032 + -0.0
153,043 + +0.8
153,057 + -0.0
153,057 + -0.0
153,058 - +0.6
153,069 + +1.0
153,138 + +0.5
153,138 + -0.0
153,138 + -0.0
153,138 + -0.0
153,139 - +2.6
153,139 - +1.2
153,139 - -0.0
153,139 - -0.0
153,151 - +1.0
153,151 - +1.5
153,151 - +1.0
153,151 - +1.8
153,347 + Rru_A0131 0.17 -0.0
153,347 + Rru_A0131 0.17 +1.1
153,347 + Rru_A0131 0.17 +1.8
153,347 + Rru_A0131 0.17 -0.0
153,348 - Rru_A0131 0.17 +1.4
153,356 + Rru_A0131 0.18 -0.0
153,507 + Rru_A0131 0.33 +0.2
153,507 + Rru_A0131 0.33 -0.0
153,507 + Rru_A0131 0.33 -0.0
153,508 - Rru_A0131 0.33 -0.0
153,508 - Rru_A0131 0.33 +1.3
153,557 + Rru_A0131 0.38 +2.2
153,557 + Rru_A0131 0.38 -0.0
153,557 + Rru_A0131 0.38 +0.3
153,557 + Rru_A0131 0.38 +0.5
153,558 - Rru_A0131 0.38 -1.0
153,558 - Rru_A0131 0.38 -2.0
153,558 - Rru_A0131 0.38 -1.6
153,558 - Rru_A0131 0.38 +0.8
153,558 - Rru_A0131 0.38 +2.0
153,573 - Rru_A0131 0.39 -0.0
153,639 - Rru_A0131 0.46 +1.5
153,710 + Rru_A0131 0.53 -1.0
153,710 + Rru_A0131 0.53 +1.9
153,711 - Rru_A0131 0.53 +0.9
153,875 + Rru_A0131 0.69 +1.0
153,875 + Rru_A0131 0.69 -1.6
153,875 + Rru_A0131 0.69 -0.0
153,992 + Rru_A0131 0.80 -1.0
153,992 + Rru_A0131 0.80 -0.3
153,992 + Rru_A0131 0.80 -0.0
153,993 - Rru_A0131 0.81 +0.8
153,993 - Rru_A0131 0.81 +1.2
153,993 - Rru_A0131 0.81 +1.5
154,093 + +1.3
154,093 + +0.7
154,093 + -0.0
154,093 + +0.8
154,093 + +1.1
154,094 - +1.9
154,094 - +1.8
154,213 + -0.0
154,213 + +0.4
154,213 + +1.1
154,214 - +0.9
154,214 - -0.0
154,214 - +1.0
154,394 + Rru_A0132 0.12 +1.3
154,395 - Rru_A0132 0.12 -0.0
154,396 + Rru_A0132 0.12 -0.0
154,396 + Rru_A0132 0.12 -0.0
154,397 - Rru_A0132 0.12 +1.0
154,420 + Rru_A0132 0.13 +0.4
154,420 + Rru_A0132 0.13 +1.4
154,420 + Rru_A0132 0.13 +0.3
154,421 - Rru_A0132 0.13 +1.6
154,421 - Rru_A0132 0.13 -0.0
154,525 + Rru_A0132 0.20 +0.8
154,525 + Rru_A0132 0.20 +1.6
154,558 + Rru_A0132 0.22 +0.4
154,558 + Rru_A0132 0.22 +1.0
154,559 - Rru_A0132 0.22 -1.0
154,559 - Rru_A0132 0.22 +1.2
154,821 + Rru_A0132 0.39 -0.0
155,065 + Rru_A0132 0.54 -0.0
155,065 + Rru_A0132 0.54 +1.8
155,065 + Rru_A0132 0.54 -0.0
155,065 + Rru_A0132 0.54 +0.7

Or see this region's nucleotide sequence