Experiment: Succinic Acid; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0129 and Rru_AR0003 are separated by 225 nucleotides Rru_AR0003 and Rru_A0130 are separated by 136 nucleotides Rru_A0130 and Rru_A0131 are separated by 246 nucleotides
Rru_A0129: Rru_A0129 - hypothetical protein (NCBI), at 149,921 to 151,015
_A0129
Rru_AR0003: Rru_AR0003 - tRNA-Arg (NCBI), at 151,241 to 151,317
_AR0003
Rru_A0130: Rru_A0130 - chemotaxis sensory transducer (NCBI), at 151,454 to 152,929
_A0130
Rru_A0131: Rru_A0131 - Response regulator receiver (CheY) and unknown domain protein (NCBI), at 153,176 to 154,189
_A0131
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 150.843 kb on + strand, within Rru_A0129 at 151.175 kb on + strand at 151.220 kb on + strand at 151.456 kb on - strand at 151.456 kb on - strand at 151.460 kb on + strand at 151.460 kb on + strand at 151.549 kb on + strand at 151.549 kb on + strand at 151.550 kb on - strand at 151.550 kb on - strand at 152.139 kb on + strand, within Rru_A0130 at 152.140 kb on - strand, within Rru_A0130 at 152.140 kb on - strand, within Rru_A0130 at 152.535 kb on + strand, within Rru_A0130 at 152.562 kb on + strand, within Rru_A0130 at 152.562 kb on + strand, within Rru_A0130 at 152.563 kb on - strand, within Rru_A0130 at 152.563 kb on - strand, within Rru_A0130 at 152.574 kb on + strand, within Rru_A0130 at 152.993 kb on + strand at 152.993 kb on + strand at 153.020 kb on + strand at 153.020 kb on + strand at 153.020 kb on + strand at 153.020 kb on + strand at 153.021 kb on - strand at 153.021 kb on - strand at 153.022 kb on + strand at 153.022 kb on + strand at 153.022 kb on + strand at 153.023 kb on - strand at 153.032 kb on + strand at 153.043 kb on + strand at 153.057 kb on + strand at 153.057 kb on + strand at 153.058 kb on - strand at 153.069 kb on + strand at 153.138 kb on + strand at 153.138 kb on + strand at 153.138 kb on + strand at 153.138 kb on + strand at 153.139 kb on - strand at 153.139 kb on - strand at 153.139 kb on - strand at 153.139 kb on - strand at 153.151 kb on - strand at 153.151 kb on - strand at 153.151 kb on - strand at 153.151 kb on - strand at 153.347 kb on + strand, within Rru_A0131 at 153.347 kb on + strand, within Rru_A0131 at 153.347 kb on + strand, within Rru_A0131 at 153.347 kb on + strand, within Rru_A0131 at 153.348 kb on - strand, within Rru_A0131 at 153.356 kb on + strand, within Rru_A0131 at 153.507 kb on + strand, within Rru_A0131 at 153.507 kb on + strand, within Rru_A0131 at 153.507 kb on + strand, within Rru_A0131 at 153.508 kb on - strand, within Rru_A0131 at 153.508 kb on - strand, within Rru_A0131 at 153.557 kb on + strand, within Rru_A0131 at 153.557 kb on + strand, within Rru_A0131 at 153.557 kb on + strand, within Rru_A0131 at 153.557 kb on + strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.558 kb on - strand, within Rru_A0131 at 153.573 kb on - strand, within Rru_A0131 at 153.639 kb on - strand, within Rru_A0131 at 153.710 kb on + strand, within Rru_A0131 at 153.710 kb on + strand, within Rru_A0131 at 153.711 kb on - strand, within Rru_A0131 at 153.875 kb on + strand, within Rru_A0131 at 153.875 kb on + strand, within Rru_A0131 at 153.875 kb on + strand, within Rru_A0131
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 9 uM remove 150,843 + Rru_A0129 0.84 +1.9 151,175 + +0.5 151,220 + -0.0 151,456 - +1.2 151,456 - +2.1 151,460 + -0.0 151,460 + -0.0 151,549 + +1.5 151,549 + +0.5 151,550 - -0.0 151,550 - +1.1 152,139 + Rru_A0130 0.46 +0.2 152,140 - Rru_A0130 0.46 +0.8 152,140 - Rru_A0130 0.46 +1.1 152,535 + Rru_A0130 0.73 +0.4 152,562 + Rru_A0130 0.75 +0.6 152,562 + Rru_A0130 0.75 +0.5 152,563 - Rru_A0130 0.75 +2.1 152,563 - Rru_A0130 0.75 -0.0 152,574 + Rru_A0130 0.76 +1.0 152,993 + -0.0 152,993 + -0.0 153,020 + +1.0 153,020 + +1.0 153,020 + -2.6 153,020 + -0.0 153,021 - +3.1 153,021 - +1.1 153,022 + -1.0 153,022 + +2.0 153,022 + +0.9 153,023 - -0.0 153,032 + -0.0 153,043 + +0.8 153,057 + -0.0 153,057 + -0.0 153,058 - +0.6 153,069 + +1.0 153,138 + +0.5 153,138 + -0.0 153,138 + -0.0 153,138 + -0.0 153,139 - +2.6 153,139 - +1.2 153,139 - -0.0 153,139 - -0.0 153,151 - +1.0 153,151 - +1.5 153,151 - +1.0 153,151 - +1.8 153,347 + Rru_A0131 0.17 -0.0 153,347 + Rru_A0131 0.17 +1.1 153,347 + Rru_A0131 0.17 +1.8 153,347 + Rru_A0131 0.17 -0.0 153,348 - Rru_A0131 0.17 +1.4 153,356 + Rru_A0131 0.18 -0.0 153,507 + Rru_A0131 0.33 +0.2 153,507 + Rru_A0131 0.33 -0.0 153,507 + Rru_A0131 0.33 -0.0 153,508 - Rru_A0131 0.33 -0.0 153,508 - Rru_A0131 0.33 +1.3 153,557 + Rru_A0131 0.38 +2.2 153,557 + Rru_A0131 0.38 -0.0 153,557 + Rru_A0131 0.38 +0.3 153,557 + Rru_A0131 0.38 +0.5 153,558 - Rru_A0131 0.38 -1.0 153,558 - Rru_A0131 0.38 -2.0 153,558 - Rru_A0131 0.38 -1.6 153,558 - Rru_A0131 0.38 +0.8 153,558 - Rru_A0131 0.38 +2.0 153,573 - Rru_A0131 0.39 -0.0 153,639 - Rru_A0131 0.46 +1.5 153,710 + Rru_A0131 0.53 -1.0 153,710 + Rru_A0131 0.53 +1.9 153,711 - Rru_A0131 0.53 +0.9 153,875 + Rru_A0131 0.69 +1.0 153,875 + Rru_A0131 0.69 -1.6 153,875 + Rru_A0131 0.69 -0.0
Or see this region's nucleotide sequence